> CD47 molecule (CD47)
NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy
 Search
NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
MGC | ZGC | XGC
Finding cDNAs
UGID:241451     UniGene Hs.446414     Homo sapiens (human)   CD47 Order cDNA clone, Links
CD47 molecule (CD47)

Human protein-coding gene CD47. Represented by 622 ESTs from 250 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 241451 - Hs.446414]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001768.1 CD47 gene product H. sapiens 100.0 322
XP_516636.2 PREDICTED: leukocyte surface antigen CD47 P. troglodytes 99.7 311
NP_034711.1 Cd47 gene product M. musculus 71.5 323
Other hits (2 of 11) [Show all]SpeciesId(%)Len(aa)
XP_001100580.1 PREDICTED: leukocyte surface antigen CD47 isoform 3 M. mulatta 99.4 322
XP_003893938.1 PREDICTED: leukocyte surface antigen CD47 isoform 2 P. anubis 99.4 322

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; mixed; connective tissue; placenta; lung; uterus; ovary; uncharacterized tissue; esophagus; testis; intestine; prostate; pancreas; mammary gland; kidney; thyroid; pharynx; vascular; skin; larynx; trachea; thymus; eye; stomach; embryonic tissue; muscle; pituitary gland; blood; lymph node; mouth; spleen; adrenal gland; bone; heart; bone marrow; liver; cervix; ear; bladder; ascites; nerve; adipose tissue
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 3
Map position: 3q13.1-q13.2
UniSTS entry: Chr 3 D3S4195
UniSTS entry: Chr 3 STS-X69398
UniSTS entry: Chr 3 STS-Z25521 [Map Viewer]
UniSTS entry: Chr 3 SHGC-12537 [Map Viewer]
UniSTS entry: Chr 3 RH78419 [Map Viewer]
UniSTS entry: Chr 3 RH78668
UniSTS entry: Chr 3 SHGC-77192 [Map Viewer]
UniSTS entry: Chr 3 D3S4214
UniSTS entry: Chr 3 RH94184
UniSTS entry: Chr 3 SHGC-77177 [Map Viewer]
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (13)

BC045593.1 Homo sapiens CD47 molecule, mRNA (cDNA clone IMAGE:5287620) A
BT006907.1 Homo sapiens CD47 antigen (Rh-related antigen, integrin-associated signal transducer) mRNA, complete cds P
BC053959.1 Homo sapiens CD47 molecule, mRNA (cDNA clone IMAGE:5275016) A
BX640889.1 Homo sapiens mRNA; cDNA DKFZp686I08120 (from clone DKFZp686I08120) A
NM_001777.3 Homo sapiens CD47 molecule (CD47), transcript variant 1, mRNA P
NM_198793.2 Homo sapiens CD47 molecule (CD47), transcript variant 2, mRNA P
BC010016.2 Homo sapiens CD47 molecule, mRNA (cDNA clone MGC:15298 IMAGE:4303534), complete cds PA
BC012884.1 Homo sapiens CD47 molecule, mRNA (cDNA clone MGC:9240 IMAGE:3857911), complete cds PA
AK289813.1 Homo sapiens cDNA FLJ75907 complete cds, highly similar to Homo sapiens CD47 antigen (Rh-related antigen, integrin-associatedsignal transducer) (CD47), transcript variant 1, mRNA P
AK096670.1 Homo sapiens cDNA FLJ39351 fis, clone PEBLM2001072
BC037306.1 Homo sapiens CD47 molecule, mRNA (cDNA clone MGC:33903 IMAGE:5260986), complete cds PA
Z25521.1 H.sapiens integrin associated protein mRNA, complete CDS PA
X69398.1 H.sapiens mRNA for OA3 antigenic surface determinant P

EST sequences (10 of 622) [Show all sequences]

AA960793.1 Clone IMAGE:1564566 mixed 3' read
AA969906.1 Clone IMAGE:1581131 mixed 3' read A
AA972834.1 Clone IMAGE:1578716 mixed 3' read
AA976090.1 Clone IMAGE:1556153 uncharacterized tissue 3' read A
R16550.1 Clone IMAGE:129601 mixed 3' read
R16607.1 Clone IMAGE:129601 mixed 5' read
AI016116.1 Clone IMAGE:1618712 testis 3' read A
AI018009.1 Clone IMAGE:1628355 mixed 3' read
AI082024.1 Clone IMAGE:1678601 mixed 3' read A
CB051157.1 Clone IMAGE:3289475 prostate 3' read PA


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help