> Collagen, type V, alpha 2 (COL5A2)
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UGID:240864     UniGene Hs.445827     Homo sapiens (human)   COL5A2 Order cDNA clone, Links
Collagen, type V, alpha 2 (COL5A2)

Human protein-coding gene COL5A2. Represented by 613 ESTs from 202 cDNA libraries. Corresponds to reference sequence NM_000393.3. [UniGene 240864 - Hs.445827]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_000384.2 COL5A2 gene product H. sapiens 100.0 1498
XP_001164152.1 PREDICTED: collagen alpha-2(V) chain isoform 4 P. troglodytes 99.9 1498
XP_003907768.1 PREDICTED: collagen alpha-2(V) chain P. anubis 99.7 1498
NP_031763.2 Col5a2 gene product M. musculus 96.6 1496
NP_001139254.1 collagen alpha-2(V) chain precursor D. rerio 74.0 1481
NP_001081258.1 collagen alpha-1(II) chain precursor X. laevis 67.0 1485
NP_001022663.1 Protein EMB-9, isoform b C. elegans 46.8 1227
NP_723044.1 collagen type IV, isoform A D. melanogaster 45.5 1255
Other hits (2 of 40) [Show all]SpeciesId(%)Len(aa)
NP_001098759.1 COL5A2 gene product S. scrofa 98.0 1498
XP_001501867.1 PREDICTED: collagen alpha-2(V) chain E. caballus 97.9 1498

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: embryonic tissue; brain; uncharacterized tissue; uterus; lung; mixed; bone; eye; mammary gland; liver; placenta; skin; intestine; pancreas; heart; vascular; lymph node; connective tissue; bone marrow; stomach; kidney; pharynx; ovary; mouth; muscle; testis; thymus; bladder; ear; prostate; umbilical cord; larynx; adipose tissue; esophagus; nerve; ganglia; spleen; cervix; thyroid; parathyroid
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 2
Map position: 2q14-q32
UniSTS entry: Chr 2 GDB:181239
UniSTS entry: Chr 2 RH66811 [Map Viewer]
UniSTS entry: Chr 2 RH67772
UniSTS entry: Chr 2 WI-19973 [Map Viewer]
UniSTS entry: Chr 2 D2S2590 [Map Viewer]
UniSTS entry: Chr 2 RH81066
UniSTS entry: Chr 2 COL5A2_1241
UniSTS entry: Chr 7 STS-D45621 [Map Viewer]
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (13)

BC043613.1 Homo sapiens collagen, type V, alpha 2, mRNA (cDNA clone IMAGE:6047742), complete cds PA
NM_000393.3 Homo sapiens collagen, type V, alpha 2 (COL5A2), mRNA P
M11718.1 Human alpha-2 type V collagen gene, 3' end P
BC086874.1 Homo sapiens collagen, type V, alpha 2, mRNA (cDNA clone MGC:105115 IMAGE:30708812), complete cds PA
AB209045.1 Homo sapiens mRNA for alpha 2 type V collagen preproprotein variant protein P
AK300146.1 Homo sapiens cDNA FLJ53096 complete cds, highly similar to Collagen alpha-2(V) chain precursor P
AK297936.1 Homo sapiens cDNA FLJ60734 complete cds, highly similar to Collagen alpha-2(V) chain precursor P
BC015705.1 Homo sapiens collagen, type V, alpha 2, mRNA (cDNA clone IMAGE:3909137), with apparent retained intron PA
X04758.1 Human mRNA for pro-alpha 2 (V) collagen chain P
M31365.1 Human alpha-2 type V collagen mRNA, 5' flank
M10956.1 Human collagen type V alpha-2 chain, partial cds P
J04478.1 Human collagen type V alpha-2 mRNA, 5' end P
Y14690.1 Homo sapiens mRNA for procollagen alpha 2(V) P

EST sequences (10 of 613) [Show all sequences]

AA962371.1 Clone IMAGE:1580104 mixed 3' read
AI075140.1 Clone IMAGE:1672889 mixed 3' read A
AI077562.1 Clone IMAGE:1677172 embryonic tissue 3' read A
AI088658.1 Clone IMAGE:1696201 uterus 3' read A
AI091366.1 Clone IMAGE:1566968 mixed 3' read
AI122842.1 Clone IMAGE:1694970 uterus 3' read P
AI125731.1 Clone IMAGE:1737235 testis 3' read A
AI127349.1 Clone IMAGE:1708614 heart 3' read
AI127946.1 Clone IMAGE:1711341 uterus 3' read A
AI128830.1 Clone IMAGE:1694426 heart 3' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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