> SNW domain containing 1 (SNW1)
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UGID:240535     UniGene Hs.445498     Homo sapiens (human)   SNW1 Order cDNA clone, Links
SNW domain containing 1 (SNW1)

Human protein-coding gene SNW1. Represented by 770 ESTs from 288 cDNA libraries. Corresponds to reference sequence NM_012245.2. [UniGene 240535 - Hs.445498]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_003902160.1 PREDICTED: SNW domain-containing protein 1 isoform 1 P. anubis 100.0 535
XP_510097.2 PREDICTED: SNW domain-containing protein 1 isoform 3 P. troglodytes 100.0 535
NP_036377.1 SNW1 gene product H. sapiens 100.0 535
XP_868300.2 PREDICTED: SNW domain-containing protein 1 isoform 3 C. lupus familiaris 100.0 535
NP_001071302.1 SNW1 gene product B. taurus 100.0 535
XP_004010870.1 PREDICTED: SNW domain-containing protein 1 isoform 1 O. aries 100.0 535
XP_002719668.1 PREDICTED: SKI-interacting protein O. cuniculus 100.0 535
XP_003362145.1 PREDICTED: SNW domain-containing protein 1-like isoform 1 S. scrofa 99.8 538
NP_079783.2 Snw1 gene product M. musculus 99.8 535
NP_001102749.1 SNW domain-containing protein 1 R. norvegicus 99.8 535
XP_001367089.1 PREDICTED: SNW domain-containing protein 1-like M. domestica 99.8 535
XP_001492173.2 PREDICTED: SNW domain-containing protein 1-like isoform 1 E. caballus 99.8 535
XP_001096395.2 PREDICTED: SNW domain-containing protein 1 M. mulatta 99.6 470
NP_001089903.1 SNW domain containing 1 X. laevis 93.5 534
NP_001002864.1 snw1 gene product D. rerio 92.5 535
NP_511093.2 Bx42, isoform A D. melanogaster 77.3 546
NP_505950.1 Protein SKP-1 C. elegans 70.6 533
NP_565151.1 chromatin protein family A. thaliana 60.0 558
XP_001689771.1 predicted protein C. reinhardtii 59.1 492
XP_961188.1 pre-mRNA splicing factor prp45 N. crassa 56.8 560
Other hits (2 of 50) [Show all]SpeciesId(%)Len(aa)
XP_001505367.2 PREDICTED: SNW domain-containing protein 1 O. anatinus 99.4 534
XP_003214414.1 PREDICTED: SNW domain-containing protein 1-like A. carolinensis 98.7 536

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; testis; mixed; liver; blood; lymph node; lung; uterus; kidney; ear; ovary; uncharacterized tissue; bladder; skin; muscle; cervix; placenta; embryonic tissue; bone marrow; intestine; adrenal gland; pituitary gland; mammary gland; eye; connective tissue; spleen; stomach; thymus; pancreas; lymph; heart; prostate; esophagus; vascular; bone; pharynx; tonsil; ascites; trachea; thyroid; umbilical cord; adipose tissue; parathyroid; mouth
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 14
Map position: 14q24.3
UniSTS entry: Chr 14 D14S691E
UniSTS entry: Chr 14 D14S857
UniSTS entry: Chr 1 SHGC-75044 [Map Viewer]
UniSTS entry: RH102484
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (18)

AF045184.1 Homo sapiens nuclear receptor coactivator NCoA-62 mRNA, complete cds PA
BC046105.2 Homo sapiens SNW domain containing 1, mRNA (cDNA clone IMAGE:5123391), partial cds PA
BC051806.1 Homo sapiens cDNA clone IMAGE:5755350, partial cds A
NM_012245.2 Homo sapiens SNW domain containing 1 (SNW1), mRNA PA
BC065286.1 Homo sapiens SNW domain containing 1, mRNA (cDNA clone IMAGE:6015770), partial cds PA
CR457433.1 Homo sapiens full open reading frame cDNA clone RZPDo834B066D for gene SNW1, SKI-interacting protein; complete cds, incl. stopcodon P
BT020061.1 Homo sapiens SKI-interacting protein mRNA, complete cds P
BT020060.1 Homo sapiens SKI-interacting protein mRNA, complete cds P
BC108903.1 Homo sapiens SNW domain containing 1, mRNA (cDNA clone MGC:119379 IMAGE:40006529), complete cds P
BC108902.1 Homo sapiens cDNA clone IMAGE:40006528
BC105585.1 Homo sapiens SNW domain containing 1, mRNA (cDNA clone IMAGE:6738734), partial cds PA
U51432.1 Homo sapiens nuclear protein Skip mRNA, complete cds P
AK292274.1 Homo sapiens cDNA FLJ76433 complete cds, highly similar to Homo sapiens SNW domain containing 1 (SNW1), mRNA PA
AK293619.1 Homo sapiens cDNA FLJ59238 complete cds, highly similar to SNW domain-containing protein 1 P
AK302246.1 Homo sapiens cDNA FLJ51388 complete cds, highly similar to SNW domain-containing protein 1 PA
BC032377.2 Homo sapiens SNW domain containing 1, mRNA (cDNA clone IMAGE:5111389) PA
AK316087.1 Homo sapiens cDNA, FLJ78986 complete cds, highly similar to SNW domain-containing protein 1 P
BC040112.2 Homo sapiens SNW domain containing 1, mRNA (cDNA clone IMAGE:5581513), partial cds PA

EST sequences (10 of 770) [Show all sequences]

AA978332.1 Clone IMAGE:1568115 lung 3' read
AA977036.1 Clone IMAGE:1586924 uncharacterized tissue 3' read A
AA984540.1 Clone IMAGE:1630195 brain 3' read
AA922004.1 Clone IMAGE:1543575 mixed 3' read A
AI146881.1 Clone IMAGE:1666628 skin 3' read A
CB053921.1 Clone IMAGE:3291246 brain 3' read A
CB053922.1 Clone IMAGE:3291246 brain 5' read P
BX109772.1 Clone IMAGp998K09679_;_IMAGE:303104 lung P
AI201509.1 Clone IMAGE:1943826 prostate 3' read A
CB160260.1 Clone L18POOL1n1-52-F07 liver 5' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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