> DEP domain containing 1 (DEPDC1)
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UGID:240135     UniGene Hs.445098     Homo sapiens (human)   DEPDC1 Order cDNA clone, Links
DEP domain containing 1 (DEPDC1)

Human protein-coding gene DEPDC1. Represented by 147 ESTs from 89 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 240135 - Hs.445098]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001107592.1 DEPDC1 gene product H. sapiens 100.0 810
XP_001165339.1 PREDICTED: DEP domain-containing protein 1A isoform 3 P. troglodytes 99.9 811
NP_001165563.1 Depdc1a gene product M. musculus 86.7 805
NP_001085413.1 DEP domain-containing protein 1A X. laevis 70.6 805
NP_942573.1 depdc1a gene product D. rerio 62.2 799
Other hits (2 of 22) [Show all]SpeciesId(%)Len(aa)
XP_003892092.1 PREDICTED: DEP domain-containing protein 1A isoform 1 P. anubis 98.9 811
XP_001096623.1 PREDICTED: DEP domain-containing protein 1A isoform 4 M. mulatta 98.4 811

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: testis; uncharacterized tissue; brain; mixed; kidney; stomach; esophagus; eye; liver; intestine; bone marrow; skin; vascular; mouth; blood; connective tissue; thymus; umbilical cord; bone; prostate; uterus; lymph; ascites; lymph node; embryonic tissue; placenta; salivary gland; ovary; lung; mammary gland; nerve
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 1
Map position: 1p31.2
UniSTS entry: Chr 1 WI-16706 [Map Viewer]
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (16)

BC065304.1 Homo sapiens DEP domain containing 1, mRNA (cDNA clone MGC:70715 IMAGE:6156084), complete cds PA
AK000361.1 Homo sapiens cDNA FLJ20354 fis, clone HEP15013 PA
AK000490.1 Homo sapiens cDNA FLJ20483 fis, clone KAT07613 PA
NM_017779.4 Homo sapiens DEP domain containing 1 (DEPDC1), transcript variant 2, mRNA PA
AJ278112.1 Homo sapiens mRNA for putative cell cycle control protein (SDP35 gene) PA
AK022792.1 Homo sapiens cDNA FLJ12730 fis, clone NT2RP2000098 P
AK225735.1 Homo sapiens mRNA for DEP domain containing 1 variant, clone: TST07208 PA
AB281274.1 Homo sapiens DEPDC1-V2 mRNA for DEPDC1 isoform 2, complete cds PA
AB281187.1 Homo sapiens DEPDC1-V1 mRNA for DEP domain containing 1 isoform 1, complete cds PA
NM_001114120.1 Homo sapiens DEP domain containing 1 (DEPDC1), transcript variant 1, mRNA PA
AL834208.1 Homo sapiens mRNA; cDNA DKFZp434K0831 (from clone DKFZp434K0831) PA
BC011743.2 Homo sapiens DEP domain containing 1, mRNA (cDNA clone IMAGE:3349960), partial cds PA
BC003511.1 Homo sapiens DEP domain containing 1, mRNA (cDNA clone IMAGE:3546864), partial cds PA
AK299324.1 Homo sapiens cDNA FLJ61652 complete cds, highly similar to Mus musculus DEP domain containing 1a (Depdc1a), mRNA P
BC035506.2 Homo sapiens DEP domain containing 1, mRNA (cDNA clone IMAGE:3353922), partial cds PA
BC041580.1 Homo sapiens DEP domain containing 1, mRNA (cDNA clone IMAGE:4646549), with apparent retained intron PA

EST sequences (10 of 147) [Show all sequences]

AA907054.1 Clone IMAGE:1540670 mixed 3' read P
AI004966.1 Clone IMAGE:1624805 embryonic tissue 3' read A
AI049842.1 Clone IMAGE:1699324 kidney 3' read A
AI052728.1 Clone IMAGE:1676529 embryonic tissue 3' read P
BX102313.1 Clone IMAGp998K0780_;_IMAGE:108798 mixed
AI215410.1 Clone IMAGE:1844332 mixed 3' read A
CB121202.1 Clone L10ChoCK0-30-E03 liver 5' read P
AI383026.1 Clone IMAGE:2064586 mixed 3' read A
AI810054.1 Clone IMAGE:2361853 mixed 3' read A
AI810084.1 Clone IMAGE:2360464 mixed 3' read PA


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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