> Cleft lip and palate associated transmembrane protein 1 (CLPTM1)
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UGID:239478     UniGene Hs.444441     Homo sapiens (human)   CLPTM1 Order cDNA clone, Links
Cleft lip and palate associated transmembrane protein 1 (CLPTM1)

Human protein-coding gene CLPTM1. Represented by 690 ESTs from 299 cDNA libraries. Corresponds to 3 reference sequences (different isoforms). [UniGene 239478 - Hs.444441]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_003918643.1 PREDICTED: cleft lip and palate transmembrane protein 1 isoform 1 P. anubis 100.0 668
XP_001162487.1 PREDICTED: cleft lip and palate transmembrane protein 1 isoform 3 P. troglodytes 100.0 668
NP_001285.1 CLPTM1 gene product H. sapiens 100.0 668
XP_001102508.2 PREDICTED: cleft lip and palate transmembrane protein 1-like isoform 2 M. mulatta 99.8 686
XP_003127271.2 PREDICTED: cleft lip and palate transmembrane protein 1 S. scrofa 99.5 636
NP_062623.2 Clptm1 gene product M. musculus 99.2 663
NP_001003647.2 clptm1 gene product D. rerio 87.8 625
NP_001081117.1 mitogen-activated protein kinase kinase 7 X. laevis 77.7 103
NP_509196.2 Protein C36B7.6 C. elegans 67.9 589
NP_608819.1 CG3702, isoform A D. melanogaster 65.8 637
XP_001694627.1 transmembrane protein C. reinhardtii 63.1 314
NP_196467.1 transmembrane CLPTM1 family protein A. thaliana 59.7 387
XP_960890.1 hypothetical protein NCU06710 N. crassa 56.4 312
Other hits (2 of 55) [Show all]SpeciesId(%)Len(aa)
XP_541570.2 PREDICTED: cleft lip and palate transmembrane protein 1 isoform 1 C. lupus familiaris 99.4 672
NP_001040078.1 CLPTM1 gene product B. taurus 99.2 669

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; uncharacterized tissue; testis; mixed; skin; lung; kidney; intestine; eye; stomach; esophagus; placenta; pancreas; embryonic tissue; prostate; uterus; blood; mammary gland; connective tissue; ovary; cervix; spleen; heart; bone marrow; adrenal gland; ear; lymph; thymus; mouth; liver; amniotic fluid; bladder; ascites; bone; larynx; thyroid; pituitary gland; muscle; vascular; nerve; lymph node; trachea
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 19
Map position: 19q13.3
UniSTS entry: Chr 19 RH91487
UniSTS entry: Chr 19 RH47704
UniSTS entry: RH93459
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (15)

AF037339.1 Homo sapiens cleft lip and palate transmembrane protein 1 (CLPTM1) mRNA, complete cds PA
BT007262.1 Homo sapiens cleft lip and palate associated transmembrane protein 1 mRNA, complete cds P
NM_001294.2 Homo sapiens cleft lip and palate associated transmembrane protein 1 (CLPTM1), transcript variant 2, mRNA PA
AK223553.1 Homo sapiens mRNA for cleft lip and palate associated transmembrane protein 1 variant, clone: FCC126F08 P
BC004865.2 Homo sapiens cleft lip and palate associated transmembrane protein 1, mRNA (cDNA clone MGC:10593 IMAGE:3840991), complete cds PA
BC012359.1 Homo sapiens cleft lip and palate associated transmembrane protein 1, mRNA (cDNA clone MGC:20444 IMAGE:4685026), complete cds PA
AK310826.1 Homo sapiens cDNA, FLJ17868 P
AK293314.1 Homo sapiens cDNA FLJ59465 complete cds, highly similar to Cleft lip and palate transmembrane protein 1 P
AK304480.1 Homo sapiens cDNA FLJ58081 complete cds, highly similar to Cleft lip and palate transmembrane protein 1 P
AK075262.1 Homo sapiens cDNA FLJ90781 fis, clone THYRO1001242, highly similar to Homo sapiens cleft lip and palate transmembrane protein 1 (CLPTM1) mRNA P
AK074935.1 Homo sapiens cDNA FLJ90454 fis, clone NT2RP3001560, highly similar to Cleft lip and palate transmembrane protein 1 P
AK027698.1 Homo sapiens cDNA FLJ14792 fis, clone NT2RP4001149, highly similar to Homo sapiens cleft lip and palate transmembrane protein 1 (CLPTM1) mRNA P
AK316094.1 Homo sapiens cDNA, FLJ78993 complete cds, highly similar to Cleft lip and palate transmembrane protein 1 P
NR_040006.1 Homo sapiens cleft lip and palate associated transmembrane protein 1 (CLPTM1), transcript variant 3, non-coding RNA PA
NR_040007.1 Homo sapiens cleft lip and palate associated transmembrane protein 1 (CLPTM1), transcript variant 4, non-coding RNA PA

EST sequences (10 of 690) [Show all sequences]

AA865886.1 Clone IMAGE:1456959 kidney 3' read A
AI023709.1 Clone IMAGE:1654242 mixed 3' read A
AA909256.1 Clone IMAGE:1542838 mixed 3' read A
AI032686.1 Clone IMAGE:1655646 mixed 3' read A
AI091266.1 Clone IMAGE:1651380 mixed 3' read A
AI097128.1 Clone IMAGE:1704534 brain 3' read A
BX100395.1 Clone IMAGp998A16295_;_IMAGE:165783 brain P
AI185842.1 Clone IMAGE:1740807 lung 3' read A
AI189900.1 Clone IMAGE:1725129 placenta 3' read A
AI214031.1 Clone IMAGE:1956754 brain 3' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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