> Intraflagellar transport 52 homolog (Chlamydomonas) (IFT52)
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UGID:239369     UniGene Hs.444332     Homo sapiens (human)   IFT52 Order cDNA clone, Links
Intraflagellar transport 52 homolog (Chlamydomonas) (IFT52)

Human protein-coding gene IFT52. Represented by 232 ESTs from 130 cDNA libraries. Corresponds to reference sequence NM_016004.2. [UniGene 239369 - Hs.444332]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_001149852.1 PREDICTED: intraflagellar transport protein 52 homolog isoform 4 P. troglodytes 100.0 436
NP_057088.2 IFT52 gene product H. sapiens 100.0 436
XP_001085430.1 PREDICTED: intraflagellar transport protein 52 homolog isoform 2 M. mulatta 99.8 436
XP_003904773.1 PREDICTED: intraflagellar transport protein 52 homolog isoform 1 P. anubis 99.8 436
NP_742162.2 Ift52 gene product M. musculus 94.8 424
NP_001087599.1 intraflagellar transport 52 homolog X. laevis 82.9 439
NP_001001834.2 ift52 gene product D. rerio 82.9 432
XP_001692161.1 intraflagellar transport protein IFT52 C. reinhardtii 54.7 415
Other hits (2 of 36) [Show all]SpeciesId(%)Len(aa)
XP_853492.2 PREDICTED: intraflagellar transport protein 52 homolog C. lupus familiaris 96.2 444
XP_002721108.1 PREDICTED: intraflagellar transport 52 homolog O. cuniculus 96.1 436

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; uncharacterized tissue; testis; intestine; lung; pancreas; mammary gland; stomach; blood; mixed; eye; placenta; kidney; embryonic tissue; uterus; adipose tissue; muscle; bone; esophagus; spleen; salivary gland; cervix; heart; connective tissue; adrenal gland; nerve; ganglia; lymph node; ovary; liver; thyroid; vascular; skin; parathyroid
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 20
UniSTS entry: Chr 20 SHGC-36858 [Map Viewer]
UniSTS entry: Chr 20 AL031488
UniSTS entry: Chr 1 D11S2560
UniSTS entry: Chr 1 GDB:314481
UniSTS entry: Chr 1 RH80030
UniSTS entry: Chr 1 D11S2921
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (6)

AK001436.1 Homo sapiens cDNA FLJ10574 fis, clone NT2RP2003265, highly similar to Intraflagellar transport 52 homolog P
NM_016004.2 Homo sapiens intraflagellar transport 52 homolog (Chlamydomonas) (IFT52), mRNA P
AF151811.1 Homo sapiens CGI-53 protein mRNA, complete cds P
AK097603.1 Homo sapiens cDNA FLJ40284 fis, clone TESTI2027791
AK301915.1 Homo sapiens cDNA FLJ50276 complete cds, moderately similar to Intraflagellar transport 52 homolog P
BC039831.1 Homo sapiens intraflagellar transport 52 homolog (Chlamydomonas), mRNA (cDNA clone MGC:48784 IMAGE:6095634), complete cds PA

EST sequences (10 of 232) [Show all sequences]

AA973550.1 Clone IMAGE:1569242 lung 3' read A
AI005395.1 Clone IMAGE:1624899 embryonic tissue 3' read A
AI040449.1 Clone IMAGE:1646983 parathyroid 3' read PA
AI051321.1 Clone IMAGE:1647481 parathyroid 3' read PA
AI076754.1 Clone IMAGE:1676403 embryonic tissue 3' read A
AI079206.1 Clone IMAGE:1669870 brain 3' read A
AA902496.1 Clone IMAGE:1521379 lung 3' read A
CB047017.1 Clone IMAGE:3252833 kidney 3' read A
CB047018.1 Clone IMAGE:3252833 kidney 5' read A
AI086973.1 Clone IMAGE:1680141 skin 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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