> Visinin-like 1 (VSNL1)
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UGID:239249     UniGene Hs.444212     Homo sapiens (human)   VSNL1 Order cDNA clone, Links
Visinin-like 1 (VSNL1)

Human protein-coding gene VSNL1. Represented by 491 ESTs from 106 cDNA libraries. Corresponds to reference sequence NM_003385.4. [UniGene 239249 - Hs.444212]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_036168.1 Vsnl1 gene product M. musculus 100.0 190
NP_036818.2 Vsnl1 gene product R. norvegicus 100.0 190
NP_001185511.1 visinin-like protein 1 T. guttata 100.0 190
NP_001072326.1 vsnl1 gene product X. tropicalis 100.0 190
NP_990586.1 VSNL1 gene product G. gallus 100.0 190
XP_003204563.1 PREDICTED: visinin-like protein 1-like M. gallopavo 100.0 190
XP_003908351.1 PREDICTED: visinin-like protein 1 P. anubis 100.0 190
XP_001135557.1 PREDICTED: visinin-like 1 isoform 4 P. troglodytes 100.0 190
NP_003376.2 VSNL1 gene product H. sapiens 100.0 190
XP_001503470.1 PREDICTED: visinin-like protein 1-like E. caballus 100.0 190
XP_003125392.1 PREDICTED: visinin-like protein 1-like isoform 2 S. scrofa 100.0 190
NP_776915.1 VSNL1 gene product B. taurus 100.0 190
XP_004005746.1 PREDICTED: visinin-like protein 1 O. aries 100.0 190
XP_002710082.1 PREDICTED: visinin-like 1 O. cuniculus 100.0 190
XP_001505514.2 PREDICTED: visinin-like protein 1-like, partial O. anatinus 100.0 136
NP_001088311.1 visinin-like 1 X. laevis 99.5 190
XP_689658.1 PREDICTED: visinin-like 1b D. rerio 97.9 190
NP_001163478.1 neurocalcin, isoform B D. melanogaster 74.5 188
XP_957456.1 neuronal calcium sensor 1 N. crassa 65.0 183
NP_508186.1 Protein NCS-1 C. elegans 59.8 184
NP_010661.3 Frq1p S. cerevisiae 55.0 180
Other hits (2 of 33) [Show all]SpeciesId(%)Len(aa)
XP_003215462.1 PREDICTED: visinin-like protein 1-like A. carolinensis 99.5 190
XP_003440750.1 PREDICTED: visinin-like protein 1-like O. niloticus 99.0 190

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; intestine; mouth; mixed; liver; eye; uncharacterized tissue; kidney; muscle; testis; adrenal gland; pancreas; prostate; stomach; lung; placenta; heart; larynx; bone
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 2
Map position: 2p24.3
UniSTS entry: Chr 2 SHGC-133056
UniSTS entry: Chr 2 SHGC-63465
UniSTS entry: Chr 2 RH80046
UniSTS entry: Chr 2 D6Rat38
UniSTS entry: Chr 2 D6Arb7
UniSTS entry: Chr 2 BMON121
UniSTS entry: Chr 1 AU048745
UniSTS entry: Chr 2 D2S1629E
UniSTS entry: RH93362
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (6)

AF039555.1 Homo sapiens visinin-like protein 1 (VSNL1) mRNA, complete cds P
NM_003385.4 Homo sapiens visinin-like 1 (VSNL1), mRNA PA
AB001104.1 Homo sapiens mRNA for hippocalcin-like protein 3, complete cds P
U14747.1 Human visinin-like peptide 1 homolog mRNA, complete cds P
BC022012.2 Homo sapiens visinin-like 1, mRNA (cDNA clone MGC:26437 IMAGE:4823954), complete cds PA
AK308816.1 Homo sapiens cDNA, FLJ98857 P

EST sequences (10 of 491) [Show all sequences]

AA969317.1 Clone IMAGE:1580474 mixed 3' read
AI000347.1 Clone IMAGE:1636997 kidney 3' read P
AI000360.1 Clone IMAGE:1637036 kidney 3' read P
R18796.1 Clone IMAGE:27132 brain 5' read
R19285.1 Clone IMAGE:129995 mixed 3' read A
AI143139.1 Clone IMAGE:1708732 heart 3' read A
AI206780.1 Clone IMAGE:1756612 lung 3' read A
AI267187.1 Clone IMAGE:2035468 brain
AI267636.1 Clone IMAGE:2038381 brain
CB117549.1 Clone B1T694954-6-B07 brain 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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