> Vacuolar protein sorting 45 homolog (S. cerevisiae) (VPS45)
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UGID:238787     UniGene Hs.443750     Homo sapiens (human)   VPS45 Order cDNA clone, Links
Vacuolar protein sorting 45 homolog (S. cerevisiae) (VPS45)

Human protein-coding gene VPS45. Represented by 582 ESTs from 255 cDNA libraries. Corresponds to reference sequence NM_007259.3. [UniGene 238787 - Hs.443750]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_001167625.1 PREDICTED: vacuolar protein sorting-associated protein 45 isoform 5 P. troglodytes 100.0 569
NP_009190.2 VPS45 gene product H. sapiens 100.0 569
XP_001098282.1 PREDICTED: vacuolar protein sorting-associated protein 45 isoform 1 M. mulatta 99.8 569
NP_001231923.1 vacuolar protein sorting-associated protein 45 S. scrofa 99.8 569
XP_533042.2 PREDICTED: vacuolar protein sorting-associated protein 45 C. lupus familiaris 99.7 569
XP_001488943.1 PREDICTED: vacuolar protein sorting-associated protein 45 isoform 1 E. caballus 99.7 569
NP_038869.1 Vps45 gene product M. musculus 98.6 569
NP_001088217.1 vacuolar protein sorting 45 homolog X. laevis 91.4 569
NP_001243585.1 vacuolar protein sorting-associated protein 45 D. rerio 88.2 567
NP_649909.1 vacuolar protein sorting 45 D. melanogaster 59.6 564
XP_963004.1 vacuolar protein sorting-associated protein 45 N. crassa 53.9 588
NP_565150.1 vacuolar protein sorting-associated protein 45-like protein A. thaliana 51.4 564
NP_741714.1 Protein VPS-45, isoform a C. elegans 50.6 535
NP_011420.3 Vps45p S. cerevisiae 45.8 203
Other hits (2 of 50) [Show all]SpeciesId(%)Len(aa)
NP_001076970.1 VPS45 gene product B. taurus 99.3 569
XP_004002487.1 PREDICTED: vacuolar protein sorting-associated protein 45 O. aries 99.3 569

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; testis; uncharacterized tissue; uterus; mixed; kidney; lung; connective tissue; liver; intestine; pancreas; skin; adrenal gland; ovary; bladder; mammary gland; cervix; blood; spleen; thymus; eye; embryonic tissue; heart; bone marrow; prostate; vascular; esophagus; trachea; mouth; bone; muscle; amniotic fluid; ascites; nerve; lymph node; parathyroid; placenta; lymph; stomach; thyroid
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 1
Map position: 1q21.2
UniSTS entry: Chr 1 D1S3029
UniSTS entry: Chr 1 WI-14283 [Map Viewer]
UniSTS entry: Chr 1 RH11755
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (14)

AJ133421.1 Homo sapiens mRNA for leucocyte vacuolar protein sorting PA
NM_007259.3 Homo sapiens vacuolar protein sorting 45 homolog (S. cerevisiae) (VPS45), mRNA P
AF165513.1 Homo sapiens vacuolar protein sorting 45 isoform (VPS45) mRNA, complete cds PA
AK223214.1 Homo sapiens mRNA for vacuolar protein sorting 45A variant, clone: STM00427 P
AK023170.1 Homo sapiens cDNA FLJ13108 fis, clone NT2RP3002529, weakly similar to VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS45 P
AY453586.1 Homo sapiens vacuolar protein sorting 45A isoform mRNA, complete cds P
BC012932.1 Homo sapiens vacuolar protein sorting 45 homolog (S. cerevisiae), mRNA (cDNA clone MGC:9230 IMAGE:3853152), complete cds PA
AK307949.1 Homo sapiens cDNA, FLJ97897 P
BC028382.2 Homo sapiens vacuolar protein sorting 45 homolog (S. cerevisiae), mRNA (cDNA clone MGC:33071 IMAGE:4818323), complete cds PA
AK301994.1 Homo sapiens cDNA FLJ52026 complete cds, highly similar to Vacuolar protein sorting-associated protein 45 P
AK298835.1 Homo sapiens cDNA FLJ54614 complete cds, highly similar to Vacuolar protein sorting-associated protein 45 P
AK298786.1 Homo sapiens cDNA FLJ50613 complete cds, highly similar to Vacuolar protein sorting-associated protein 45 P
AK295529.1 Homo sapiens cDNA FLJ54353 complete cds, highly similar to Vacuolar protein sorting-associated protein 45 P
AK293555.1 Homo sapiens cDNA FLJ50448 complete cds, highly similar to Vacuolar protein sorting-associated protein 45 P

EST sequences (10 of 582) [Show all sequences]

AA902761.1 Clone IMAGE:1519121 uncharacterized tissue 3' read A
AA907748.1 Clone IMAGE:1540947 mixed 3' read A
AA929001.1 Clone IMAGE:1565176 mixed 3' read PA
AI057492.1 Clone IMAGE:1653167 mixed 3' read A
AI087920.1 Clone IMAGE:1683095 parathyroid 3' read
AI092985.1 Clone IMAGE:1692429 heart 3' read A
AI128153.1 Clone IMAGE:1712340 uterus 3' read A
BX108000.1 Clone IMAGp998D121779_;_IMAGE:725339 ovary P
AI168261.1 Clone IMAGE:1565762 mixed 3' read A
BX111594.1 Clone IMAGp998B193510_;_IMAGE:1390002 parathyroid P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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