> Collagen, type III, alpha 1 (COL3A1)
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UGID:238662     UniGene Hs.443625     Homo sapiens (human)   COL3A1 Order cDNA clone, Links
Collagen, type III, alpha 1 (COL3A1)

Human protein-coding gene COL3A1. Represented by 2506 ESTs from 413 cDNA libraries. Corresponds to reference sequence NM_000090.3. [UniGene 238662 - Hs.443625]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_001163809.1 PREDICTED: collagen alpha-1(III) chain isoform 10 P. troglodytes 100.0 1465
NP_000081.1 COL3A1 gene product H. sapiens 100.0 1465
NP_034060.2 Col3a1 gene product M. musculus 96.4 1463
NP_001083544.1 collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal dominant) precursor X. laevis 78.3 1463
XP_962616.1 dynein heavy chain N. crassa 70.5 129
NP_958886.1 col1a1b gene product D. rerio 66.0 1448
NP_510664.1 Protein LET-2, isoform a C. elegans 48.1 1485
NP_001247141.1 CG42342, isoform J D. melanogaster 47.5 463
Other hits (2 of 48) [Show all]SpeciesId(%)Len(aa)
XP_003907767.1 PREDICTED: collagen alpha-1(III) chain P. anubis 99.5 1465
XP_001105968.2 PREDICTED: hypothetical protein LOC574131 M. mulatta 99.4 1465

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: embryonic tissue; ear; pancreas; uncharacterized tissue; eye; uterus; connective tissue; bone; lung; placenta; intestine; mixed; heart; stomach; brain; mammary gland; skin; testis; kidney; adrenal gland; ovary; amniotic fluid; liver; ascites; nerve; prostate; umbilical cord; mouth; muscle; thyroid; bone marrow; ganglia; larynx; bladder; cervix; vascular; esophagus; pharynx; adipose tissue; trachea; lymph; spinal cord; epididymis; lymph node; spleen; thymus; blood
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 2
Map position: 2q31
UniSTS entry: Chr 2 X57983
UniSTS entry: Chr 2 WI-16343 [Map Viewer]
UniSTS entry: Chr 2 COL3A1-95
UniSTS entry: Chr 2 GDB:181238
UniSTS entry: Chr 2 COL3A1-379
UniSTS entry: Chr 2 MARC_23660-23661:1029504961:1
UniSTS entry: GDB:178411
UniSTS entry: Chr 2 RH134399
UniSTS entry: Chr 2 RH69964 [Map Viewer]
UniSTS entry: GDB:178182
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (13)

BX649097.1 Homo sapiens mRNA; cDNA DKFZp686M0856 (from clone DKFZp686M0856) A
NM_000090.3 Homo sapiens collagen, type III, alpha 1 (COL3A1), mRNA P
AK021531.1 Homo sapiens cDNA FLJ11469 fis, clone HEMBA1001658
X14420.1 Human mRNA for pro-alpha-1 type 3 collagen P
AK308010.1 Homo sapiens cDNA, FLJ97958 P
BC028178.1 Homo sapiens collagen, type III, alpha 1, mRNA (cDNA clone MGC:39848 IMAGE:5405119), complete cds PA
AK091853.1 Homo sapiens cDNA FLJ34534 fis, clone HLUNG2008333, highly similar to Alpha1 (III) collagen P
M59227.1 Human alpha-1 collagen type III (COL3A1) mRNA, partial cds P
S79877.1 COL3A1=type III collagen alpha 1(III) chain {alternatively spliced, exon-17-skipping} [human, type IV Ehlers-Danlos syndrome patient, fibroblast culture, mRNA Mutant, 268 nt] P
X01655.1 Human mRNA for alpha 1 (III) collagen fragment (aa 892-1023) P
X07240.1 Human mRNA for prepro alpha1(III) collagen (N-term.) P
M13146.1 Human alpha-1 type III collagen mRNA, partial cds
X06700.1 Human mRNA 3' region for pro-alpha1(III) collagen PA

EST sequences (10 of 2506) [Show all sequences]

AA954939.1 Clone IMAGE:1574427 kidney 3' read P
AA865721.1 Clone IMAGE:1469145 uncharacterized tissue 3' read A
AA961991.1 Clone IMAGE:1592230 kidney 3' read
AA962112.1 Clone IMAGE:1600284 uncharacterized tissue 3' read A
AA903185.1 Clone IMAGE:1517181 uncharacterized tissue 3' read A
AA970227.1 Clone IMAGE:1575185 kidney 3' read A
AA970296.1 Clone IMAGE:1575239 kidney 3' read
AA973529.1 Clone IMAGE:1569218 lung 3' read A
AA976386.1 Clone IMAGE:1591495 kidney 3' read A
AA977314.1 Clone IMAGE:1591850 kidney 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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