> Carnitine palmitoyltransferase 1B (muscle) (CPT1B)
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UGID:234814     UniGene Hs.439777     Homo sapiens (human)   CPT1B Order cDNA clone, Links
Carnitine palmitoyltransferase 1B (muscle) (CPT1B)

Human protein-coding gene CPT1B. Represented by 324 ESTs from 126 cDNA libraries. Corresponds to 8 reference sequences (different isoforms). [UniGene 234814 - Hs.439777]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001138607.1 CPT1B gene product H. sapiens 100.0 771
XP_525636.3 PREDICTED: carnitine O-palmitoyltransferase 1, muscle isoform isoform 2 P. troglodytes 99.5 883
NP_034078.2 carnitine O-palmitoyltransferase 1, muscle isoform M. musculus 90.3 771
NP_001088630.1 carnitine palmitoyltransferase 1B (muscle) X. laevis 70.2 766
XP_002666893.2 PREDICTED: carnitine O-palmitoyltransferase 1, liver isoform D. rerio 69.5 767
NP_523685.2 withered, isoform A D. melanogaster 59.0 761
NP_496721.2 Protein CPT-1 C. elegans 50.5 622
Other hits (2 of 38) [Show all]SpeciesId(%)Len(aa)
XP_003905814.1 PREDICTED: carnitine O-palmitoyltransferase 1, muscle isoform isoform 1 P. anubis 98.3 771
XP_001116383.2 PREDICTED: carnitine O-palmitoyltransferase 1, muscle isoform-like M. mulatta 97.8 779

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: testis; brain; uncharacterized tissue; heart; mixed; muscle; placenta; stomach; mouth; embryonic tissue; uterus; pancreas; pituitary gland; mammary gland; eye; intestine; lymph node; prostate; kidney; lung; parathyroid; thyroid; blood; connective tissue; nerve; thymus; bladder; skin; bone marrow; bone; liver
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 22
Map position: 22q13.33
UniSTS entry: Chr 22 SHGC-34107 [Map Viewer]
UniSTS entry: Chr 22 G20256
UniSTS entry: Chr 22 A005A09
UniSTS entry: Chr 22 D22S970E
UniSTS entry: Chr 22 D22S975E
UniSTS entry: Chr 22 MARC_16689-16690:1017862088:1
UniSTS entry: Chr 22 CPT1B_7768
UniSTS entry: Chr 22 G65458
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (18)

Y08682.1 H.sapiens mRNA for carnitine palmitoyltransferase I type I P
Y08683.1 H.sapiens mRNA for carnitine palmitoyltransferase I type II P
NM_004377.3 Homo sapiens carnitine palmitoyltransferase 1B (muscle) (CPT1B), nuclear gene encoding mitochondrial protein, transcript variant 1, mRNA PA
AK223174.1 Homo sapiens mRNA for carnitine palmitoyltransferase 1B isoform a variant, clone: LNG15315 PA
BC142954.1 Homo sapiens carnitine palmitoyltransferase 1B (muscle), mRNA (cDNA clone MGC:167008 IMAGE:8860341), complete cds PA
AK291316.1 Homo sapiens cDNA FLJ76296 complete cds, highly similar to Homo sapiens carnitine palmitoyltransferase 1B (muscle) (CPT1B), transcript variant 1, mRNA P
AK299395.1 Homo sapiens cDNA FLJ58750 complete cds, highly similar to Carnitine O-palmitoyltransferase I, muscle isoform (EC 2.3.1.21) PA
AK297866.1 Homo sapiens cDNA FLJ55729 complete cds, highly similar to Carnitine O-palmitoyltransferase I, muscle isoform (EC 2.3.1.21) PA
NM_001145137.1 Homo sapiens carnitine palmitoyltransferase 1B (muscle) (CPT1B), nuclear gene encoding mitochondrial protein, transcript variant 8, mRNA PA
NM_001145136.1 Homo sapiens carnitine palmitoyltransferase 1B (muscle) (CPT1B), nuclear gene encoding mitochondrial protein, transcript variant 7, mRNA PA
NM_001145135.1 Homo sapiens carnitine palmitoyltransferase 1B (muscle) (CPT1B), nuclear gene encoding mitochondrial protein, transcript variant 6, mRNA PA
NM_001145134.1 Homo sapiens carnitine palmitoyltransferase 1B (muscle) (CPT1B), nuclear gene encoding mitochondrial protein, transcript variant 5, mRNA PA
NM_152246.2 Homo sapiens carnitine palmitoyltransferase 1B (muscle) (CPT1B), nuclear gene encoding mitochondrial protein, transcript variant 3, mRNA PA
NM_152245.2 Homo sapiens carnitine palmitoyltransferase 1B (muscle) (CPT1B), nuclear gene encoding mitochondrial protein, transcript variant 2, mRNA PA
D87812.1 Homo sapiens mRNA for carnitine palmitoyltransferase I, complete cds P
U62733.1 Human carnitine palmitoyltransferase I mRNA, nuclear gene encoding mitochondrial protein, complete cds P
U66828.1 Human carnitine palmitoyltransferase I (CPTI) mRNA, complete cds P
NR_027928.2 Homo sapiens CHKB-CPT1B readthrough (non-protein coding) (CHKB-CPT1B), non-coding RNA PA

EST sequences (10 of 324) [Show all sequences]

AA969616.1 Clone IMAGE:1579147 mixed 3' read A
AI041692.1 Clone IMAGE:1667670 parathyroid 3' read A
AI088191.1 Clone IMAGE:1683332 parathyroid 3' read A
AI125429.1 Clone IMAGE:1737041 testis 3' read PA
AI142100.1 Clone IMAGE:1651325 mixed 3' read A
AI167903.1 Clone IMAGE:1509204 mixed 3' read A
BX090461.1 Clone IMAGp998H04207_;_IMAGE:140979 placenta P
AI219796.1 Clone IMAGE:1841240 mixed 3' read A
R30877.1 Clone IMAGE:134075 placenta 3' read A
R30927.1 Clone IMAGE:134077 placenta 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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