> X-box binding protein 1 (XBP1)
NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy
 Search
NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
MGC | ZGC | XGC
Finding cDNAs
UGID:232675     UniGene Hs.437638     Homo sapiens (human)   XBP1 Order cDNA clone, Links
X-box binding protein 1 (XBP1)

Human protein-coding gene XBP1. Represented by 1336 ESTs from 384 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 232675 - Hs.437638]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001073007.1 XBP1 gene product H. sapiens 100.0 375
XP_515053.2 PREDICTED: X-box-binding protein 1 isoform 2 P. troglodytes 100.0 261
NP_001258659.1 X-box-binding protein 1 isoform XBP1(S) M. musculus 90.0 370
NP_571949.1 xbp1 gene product D. rerio 66.5 262
NP_001080523.1 X-box binding protein 1 X. laevis 63.4 374
Other hits (2 of 16) [Show all]SpeciesId(%)Len(aa)
NP_001258668.1 X-box binding protein 1 isoform XBP1(S) M. mulatta 99.2 375
XP_003904656.1 PREDICTED: uncharacterized protein LOC101003421 isoform 1 P. anubis 98.7 375

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: placenta; mammary gland; pancreas; uncharacterized tissue; uterus; testis; lung; intestine; brain; mixed; liver; prostate; embryonic tissue; salivary gland; eye; stomach; esophagus; bladder; skin; adrenal gland; blood; cervix; kidney; bone marrow; lymph; mouth; larynx; ovary; connective tissue; thyroid; heart; bone; ear; muscle; pharynx; parathyroid; lymph node; trachea; ascites; pineal gland; spleen; vascular; thymus; pituitary gland; nerve; adipose tissue; tonsil
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 22
Map position: 22q12.1|22q12
UniSTS entry: Chr 22 D22S1031
UniSTS entry: Chr 22 RH27882
UniSTS entry: Chr 22 STS-M31627
UniSTS entry: Chr 22 D22S1251 [Map Viewer]
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (12)

M31627.1 Human X box binding protein-1 (XBP-1) mRNA, complete cds PA
NM_005080.3 Homo sapiens X-box binding protein 1 (XBP1), transcript variant 1, mRNA PA
CR456611.1 Homo sapiens XBP1 full length open reading frame (ORF) cDNA clone (cDNA clone C22ORF:pGEM.XBP1.V2) P
BC000938.1 Homo sapiens X-box binding protein 1, mRNA (cDNA clone MGC:5436 IMAGE:3449394), complete cds PA
NM_001079539.1 Homo sapiens X-box binding protein 1 (XBP1), transcript variant 2, mRNA PA
BC012841.1 Homo sapiens X-box binding protein 1, mRNA (cDNA clone MGC:8980 IMAGE:3856898), complete cds PA
BC015709.1 Homo sapiens, clone IMAGE:3911945, mRNA, partial cds PA
AB076384.1 Homo sapiens XBP1 mRNA for X box-binding protein spliced form, complete cds P
AB076383.1 Homo sapiens XBP1 mRNA for X box-binding protein unspliced form, complete cds P
AK292188.1 Homo sapiens cDNA FLJ77362 complete cds, highly similar to Homo sapiens X-box binding protein 1 (XBP1), mRNA P
AK313761.1 Homo sapiens cDNA, FLJ94362 P
AK093842.1 Homo sapiens cDNA FLJ36523 fis, clone TRACH2002664 P

EST sequences (10 of 1336) [Show all sequences]

AA903693.1 Clone IMAGE:1517830 uncharacterized tissue 3' read A
AA975808.1 Clone IMAGE:1589507 kidney 3' read A
AA995422.1 Clone IMAGE:1612046 uncharacterized tissue 3' read A
AA996199.1 Clone IMAGE:1604120 lung 3' read A
AA922078.1 Clone IMAGE:1457252 intestine 3' read A
AI003698.1 Clone IMAGE:392089 pineal gland 3' read A
AI039414.1 Clone IMAGE:1658825 embryonic tissue 3' read A
AI040598.1 Clone IMAGE:1656403 mixed 3' read P
AI041493.1 Clone IMAGE:1648199 parathyroid 3' read A
AI051873.1 Clone IMAGE:1659330 embryonic tissue 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help