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Sodium channel, voltage-gated, type I, beta subunit (SCN1B)
Human protein-coding gene SCN1B. Represented by 110 ESTs from 58 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 231683 - Hs.436646]
SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
| Best Hits and Hits from model organisms | Species | Id(%) | Len(aa) |
|
|
SCN1B gene product |
H. sapiens |
100.0 |
267 |
|
|
Scn1b gene product |
M. musculus |
100.0 |
217 |
|
|
SCN1B gene product |
P. troglodytes |
100.0 |
217 |
|
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PREDICTED: sodium channel subunit beta-1 |
M. mulatta |
99.5 |
217 |
|
|
PREDICTED: sodium channel subunit beta-1 |
P. anubis |
99.5 |
217 |
|
|
SCN1B gene product |
C. lupus familiaris |
99.5 |
217 |
|
|
scn1ba gene product |
D. rerio |
55.7 |
220 |
|
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sodium channel, voltage-gated, type III, beta subunit precursor |
X. laevis |
47.0 |
185 |
| Other hits (2 of 16) [Show all] | Species | Id(%) | Len(aa) |
|
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sodium channel subunit beta-1 isoform 1 precursor |
R. norvegicus |
99.1 |
217 |
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SCN1B gene product |
B. taurus |
98.6 |
217 |
GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
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EST Profile: | Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this] |
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GEO Profiles: |
Experimental gene expression data (Gene Expression Omnibus). |
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cDNA Sources: |
brain; muscle; ovary; eye; mixed; mammary gland; spleen; uncharacterized tissue; pancreas; embryonic tissue; kidney; prostate; connective tissue; liver; bone; uterus; intestine; lung; thymus |
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.
mRNA sequences (11)
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NM_001037.4 |
Homo sapiens sodium channel, voltage-gated, type I, beta subunit (SCN1B), transcript variant a, mRNA |
PA |
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AY391842.1 |
Homo sapiens voltage gated sodium channel beta1B subunit mRNA, complete cds |
P |
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NM_199037.3 |
Homo sapiens sodium channel, voltage-gated, type I, beta subunit (SCN1B), transcript variant b, mRNA |
P |
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BC067122.1 |
Homo sapiens sodium channel, voltage-gated, type I, beta, mRNA (cDNA clone MGC:75137 IMAGE:5728955), complete cds |
PA |
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BT019923.1 |
Homo sapiens sodium channel, voltage-gated, type I, beta mRNA, complete cds |
P |
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BC112922.1 |
Homo sapiens sodium channel, voltage-gated, type I, beta, mRNA (cDNA clone MGC:131545 IMAGE:7503573), complete cds |
PA |
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L10338.1 |
Human sodium channel beta-1 subunit (SCN1B) mRNA, complete cds |
P |
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L16242.1 |
Homo sapiens sodium channel type I, beta subunit (SCN1B) mRNA, complete cds |
P |
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BC021266.2 |
Homo sapiens sodium channel, voltage-gated, type I, beta, mRNA (cDNA clone IMAGE:4585335), partial cds |
PA |
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AK313279.1 |
Homo sapiens cDNA, FLJ93791, Homo sapiens sodium channel, voltage-gated, type I, beta polypeptide (SCN1B), mRNA |
P |
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AK295477.1 |
Homo sapiens cDNA FLJ55064 complete cds, moderately similar to Sodium channel beta-1 subunit precursor |
P |
EST sequences (10 of 110) [Show all sequences]
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AI146968.1 |
Clone IMAGE:1698170 |
uterus |
3' read |
A |
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BX109377.1 |
Clone IMAGp998B24249_;_IMAGE:156983 |
mammary gland |
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AI356107.1 |
Clone IMAGE:2016821 |
brain |
3' read |
A |
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AI363495.1 |
Clone IMAGE:2017312 |
brain |
3' read |
A |
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AI307809.1 |
Clone IMAGE:2055659 |
kidney |
3' read |
A |
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AI492816.1 |
Clone IMAGE:2124220 |
mixed |
3' read |
A |
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R53503.1 |
Clone IMAGE:154103 |
mammary gland |
5' read |
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R53504.1 |
Clone IMAGE:154103 |
mammary gland |
3' read |
A |
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AI567446.1 |
Clone IMAGE:2169891 |
brain |
3' read |
A |
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AI401486.1 |
Clone IMAGE:2114053 |
mixed |
3' read |
A |
Key to Symbols
P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria
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