> NOP2/Sun domain family, member 5 pseudogene 1 (NSUN5P1)
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UGID:231071     UniGene Hs.436034     Homo sapiens (human)   NSUN5P1 Order cDNA clone, Links
NOP2/Sun domain family, member 5 pseudogene 1 (NSUN5P1)

Human pseudo gene NSUN5P1. Represented by 274 ESTs from 156 cDNA libraries. Corresponds to reference sequence NR_033322.2. [UniGene 231071 - Hs.436034]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_001916205.1 PREDICTED: LOW QUALITY PROTEIN: putative methyltransferase NSUN5-like E. caballus 84.6 258
NP_001161819.1 NSUN5 gene product H. sapiens 82.5 469
NP_663389.2 Nsun5 gene product M. musculus 72.7 417
NP_998450.1 nsun5 gene product D. rerio 61.4 254
XP_001698198.1 hypothetical protein CHLREDRAFT_41764 C. reinhardtii 48.8 210
Other hits (2 of 25) [Show all]SpeciesId(%)Len(aa)
XP_519138.3 PREDICTED: putative methyltransferase NSUN5 P. troglodytes 83.2 469
XP_003895915.1 PREDICTED: putative methyltransferase NSUN5 P. anubis 81.1 469

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; uncharacterized tissue; skin; stomach; embryonic tissue; mixed; testis; uterus; intestine; lung; ovary; lymph node; prostate; connective tissue; blood; kidney; pancreas; thyroid; lymph; heart; liver; spleen; larynx; thymus; eye; mammary gland; adipose tissue; placenta; trachea; salivary gland; ear; tonsil; parathyroid; bone; mouth; ascites; esophagus; nerve
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 7
Map position: 7q11.23
UniSTS entry: Chr 7 RH104432
UniSTS entry: Chr 7 RH10987 [Map Viewer]
UniSTS entry: Chr 7 D7S2868 [Map Viewer]
UniSTS entry: Chr 7 SHGC-132050
UniSTS entry: Chr 7 GDB:4585440
UniSTS entry: Chr 7 GDB:1318657
UniSTS entry: Chr 7 STS-W72988
UniSTS entry: Chr 7 WI-20883 [Map Viewer]
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (10)

BC044928.1 Homo sapiens NOL1/NOP2/Sun domain family, member 5B, mRNA (cDNA clone IMAGE:5204573), with apparent retained intron PA
AK128374.1 Homo sapiens cDNA FLJ46517 fis, clone THYMU3033626, highly similar to Homo sapiens Williams-Beuren Syndrome critical region protein 20 copy B (WBSCR20B), mRNA P
BC065512.1 Homo sapiens cDNA clone IMAGE:5741853, partial cds PA
BC080602.1 Homo sapiens cDNA clone IMAGE:5017283, containing frame-shift errors PA
BC088379.1 Homo sapiens NOL1/NOP2/Sun domain family, member 5B, mRNA (cDNA clone IMAGE:6200199), with apparent retained intron PA
BC093978.1 Homo sapiens NOL1/NOP2/Sun domain family, member 5B, mRNA (cDNA clone MGC:121013 IMAGE:7939823), complete cds P
BC103750.1 Homo sapiens cDNA clone IMAGE:6010052, containing frame-shift errors PA
BC107112.1 Homo sapiens NOL1/NOP2/Sun domain family, member 5B, mRNA (cDNA clone MGC:129801 IMAGE:40022630), complete cds P
AF416610.1 Homo sapiens Williams-Beuren Syndrome critical region protein 20 copy B (WBSCR20B) mRNA, complete cds P
NR_033322.2 Homo sapiens NOP2/Sun domain family, member 5 pseudogene 1 (NSUN5P1), non-coding RNA PA

EST sequences (10 of 274) [Show all sequences]

AI024305.1 Clone IMAGE:1642412 testis 3' read A
AI024919.1 Clone IMAGE:1639290 testis 3' read A
AI087826.1 Clone IMAGE:1567097 mixed 3' read
AI214676.1 Clone IMAGE:1883533 lung 3' read A
AI265798.1 Clone IMAGE:2006553 ovary 3' read A
CB152022.1 Clone B1T694954-17-C12 brain 5' read
CB164817.1 Clone S1SNU5-14-F01 ascites 5' read
AI284845.1 Clone IMAGE:1964520 ovary 3' read A
AI309558.1 Clone IMAGE:1913429 intestine 3' read A
AI418409.1 Clone IMAGE:2105016 brain 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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