SLU7 splicing factor homolog (S. cerevisiae) (SLU7)

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UGID:230379 UniGene Hs.435342 Homo sapiens (human) SLU7

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SLU7 splicing factor homolog (S. cerevisiae) (SLU7)

Human protein-coding gene SLU7. Represented by 406 ESTs from 213 cDNA libraries. Corresponds to reference sequence NM_006425.4. [UniGene 230379 - Hs.435342]

SELECTED PROTEIN SIMILARITIES

Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.

Best Hits and Hits from model organisms		Species	Id(%)	Len(aa)
XP_001143136.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: pre-mRNA-splicing factor SLU7 isoform 4	P. troglodytes	100.0	585
NP_006416.3 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	SLU7 gene product	H. sapiens	100.0	585
XP_001084912.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: pre-mRNA-splicing factor SLU7 isoform 2	M. mulatta	99.8	585
XP_003900513.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: LOW QUALITY PROTEIN: pre-mRNA-splicing factor SLU7	P. anubis	99.7	599
NP_683514.2 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	Slu7 gene product	M. musculus	98.8	584
NP_001007368.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	slu7 gene product	D. rerio	86.4	558
NP_651659.2 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	Slu7	D. melanogaster	61.9	571
NP_564859.2 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	Pre-mRNA-splicing factor SLU7-A	A. thaliana	55.5	525
NP_505661.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	Protein K07C5.6	C. elegans	55.2	475
XP_001693111.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	predicted protein	C. reinhardtii	54.9	419
Other hits (2 of 51) [Show all]		Species	Id(%)	Len(aa)
XP_536446.2 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: pre-mRNA-splicing factor SLU7	C. lupus familiaris	99.2	619
XP_002710237.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: step II splicing factor SLU7	O. cuniculus	99.2	586

GENE EXPRESSION

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.

	EST Profile:	Approximate expression patterns inferred from EST sources. [Show more entries with profiles like this]
	GEO Profiles:	Experimental gene expression data (Gene Expression Omnibus).
	cDNA Sources:	brain; prostate; testis; spleen; bone; kidney; heart; mouth; skin; uncharacterized tissue; ovary; intestine; eye; muscle; embryonic tissue; placenta; uterus; lung; pituitary gland; liver; blood; connective tissue; lymph node; mammary gland; pancreas; vascular; pharynx; larynx; tonsil; lymph; thyroid; mixed; thymus; trachea; spinal cord; esophagus; ascites; cervix; nerve; parathyroid

MAPPING POSITION

Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.

Chromosome:	5
Map position:	5q33.3
UniSTS entry:	Chr 5	PMC316594P1
UniSTS entry:	Chr 5	D5S1599E
UniSTS entry:	Chr 5	D5S2666
UniSTS entry:	Chr 5	WI-20638	[Map Viewer]

SEQUENCES

Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (9)

AF101074.1	Homo sapiens step II splicing factor SLU7 mRNA, complete cds	P
NM_006425.4	Homo sapiens SLU7 splicing factor homolog (S. cerevisiae) (SLU7), mRNA	PA
AY486334.1	Homo sapiens splicing factor (SLU7) mRNA, partial cds
AK024875.1	Homo sapiens cDNA: FLJ21222 fis, clone COL00616, highly similar to AF101074 Homo sapiens step II splicing factor SLU7 mRNA	PA
DQ174517.1	Homo sapiens Slu7 mRNA, partial cds, alternatively spliced	P
DQ174516.1	Homo sapiens Slu7 mRNA, partial cds, alternatively spliced	P
BC010634.1	Homo sapiens SLU7 splicing factor homolog (S. cerevisiae), mRNA (cDNA clone MGC:9280 IMAGE:3871882), complete cds	PA
AK314564.1	Homo sapiens cDNA, FLJ95388, highly similar to Homo sapiens step II splicing factor SLU7 (SLU7), mRNA	P
AK000813.1	Homo sapiens cDNA FLJ20806 fis, clone ADSE01791	PA

EST sequences (10 of 406) [Show all sequences]

R19447.1	Clone IMAGE:20082	brain	5' read
CA976106.1	Clone IMAGE:6202518	nerve	5' read	P
CB052065.1	Clone IMAGE:3290246	uncharacterized tissue	3' read	PA
AI261603.1	Clone IMAGE:2028918	kidney	3' read	PA
CB160479.1	Clone L18POOL1n1-20-C06	liver	5' read	PA
CB160482.1	Clone L18POOL1n1-20-C10	liver	5' read	PA
CB116461.1	Clone L6ChoCK0-14-G12	liver	5' read	P
CB129729.1	Clone L11SNU354-6-F03	liver	5' read	P
AI276122.1	Clone IMAGE:1877641	mixed	3' read	A
AI364197.1	Clone IMAGE:1993118	uterus	3' read	P

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria