> Ataxin 1 (ATXN1)
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UGID:229998     UniGene Hs.434961     Homo sapiens (human)   ATXN1 Order cDNA clone, Links
Ataxin 1 (ATXN1)

Human protein-coding gene ATXN1. Represented by 295 ESTs from 155 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 229998 - Hs.434961]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001121636.1 ATXN1 gene product H. sapiens 100.0 814
XP_001090278.1 PREDICTED: TBC1 domain family member 12 M. mulatta 100.0 87
NP_001121224.1 TBC1 domain family, member 12 X. laevis 95.4 87
NP_001186233.1 ataxin-1 isoform b M. musculus 89.1 790
NP_001038291.1 atxn1a gene product D. rerio 69.1 232
Other hits (2 of 19) [Show all]SpeciesId(%)Len(aa)
XP_001170170.1 PREDICTED: ataxin-1 isoform 1 P. troglodytes 99.1 808
XP_003897139.1 PREDICTED: ataxin-1 P. anubis 98.4 799

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; uncharacterized tissue; mixed; uterus; lung; kidney; liver; muscle; stomach; pancreas; pituitary gland; mammary gland; embryonic tissue; thyroid; connective tissue; mouth; skin; intestine; umbilical cord; adrenal gland; cervix; esophagus; thymus; prostate; ovary; blood; heart; testis; trachea; bone marrow; ascites; epididymis; salivary gland; eye; vascular; nerve; tonsil; lymph node; placenta; parathyroid
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 6
Map position: 6p23
UniSTS entry: Chr 6 STS-X79204 [Map Viewer]
UniSTS entry: Chr 6 WI-19222 [Map Viewer]
UniSTS entry: Chr 6 RH71007 [Map Viewer]
UniSTS entry: Chr 6 GDB:216054
UniSTS entry: Chr 6 GDB:681830
UniSTS entry: Chr 6 PMC109045P1
UniSTS entry: Chr 6 WI-9349 [Map Viewer]
UniSTS entry: Chr 6 GDB:216047
UniSTS entry: Chr 6 G15977
UniSTS entry: Chr 6 SCA1_796
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (17)

BC047894.1 Homo sapiens ataxin 1, mRNA (cDNA clone IMAGE:4472404) A
NM_000332.3 Homo sapiens ataxin 1 (ATXN1), transcript variant 1, mRNA PA
BC063120.1 Homo sapiens ataxin 1, mRNA (cDNA clone IMAGE:6496130) A
BC092446.1 Homo sapiens cDNA clone IMAGE:30413806 A
BC117125.1 Homo sapiens ataxin 1, mRNA (cDNA clone MGC:150734 IMAGE:40125676), complete cds P
BC113081.1 Homo sapiens cDNA clone IMAGE:40071544
BC011026.1 Homo sapiens ataxin 1, mRNA (cDNA clone IMAGE:4290737), partial cds A
BC014548.1 Homo sapiens ataxin 1, mRNA (cDNA clone IMAGE:4286287), partial cds A
BC113082.1 Homo sapiens cDNA clone IMAGE:40071549 P
AK311649.1 Homo sapiens cDNA, FLJ18691
AK311274.1 Homo sapiens cDNA, FLJ18316
NM_001128164.1 Homo sapiens ataxin 1 (ATXN1), transcript variant 2, mRNA PA
BC010948.1 Homo sapiens ataxin 1, mRNA (cDNA clone IMAGE:4282854), with apparent retained intron A
X79204.1 H.sapiens SCA1 mRNA for ataxin PA
BC029401.1 Homo sapiens, clone IMAGE:4282855, mRNA A
JX901140.1 Homo sapiens alternative ataxin1 mRNA, complete cds
BC039236.1 Homo sapiens ataxin 1, mRNA (cDNA clone IMAGE:4073412) A

EST sequences (10 of 295) [Show all sequences]

AA978040.1 Clone IMAGE:1590265 kidney 3' read A
AA987352.1 Clone IMAGE:1603333 lung 3' read A
AA988272.1 Clone IMAGE:1605499 kidney 3' read A
AA909468.1 Clone IMAGE:1523461 mixed 3' read P
AI023140.1 Clone IMAGE:1650563 parathyroid 3' read
AI027846.1 Clone IMAGE:1671618 uncharacterized tissue 3' read
AI040511.1 Clone IMAGE:1657136 mixed 3' read
AI052569.1 Clone IMAGE:1653403 mixed 3' read
AI052586.1 Clone IMAGE:1653417 mixed 3' read
R21017.1 Clone IMAGE:36723 brain 5' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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