> Chromosome 9 open reading frame 3 (C9orf3)
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UGID:229290     UniGene Hs.434253     Homo sapiens (human)   C9orf3 Order cDNA clone, Links
Chromosome 9 open reading frame 3 (C9orf3)

Human protein-coding gene C9orf3. Represented by 362 ESTs from 199 cDNA libraries. Corresponds to 3 reference sequences (different isoforms). [UniGene 229290 - Hs.434253]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001180258.1 C9orf3 gene product H. sapiens 100.0 818
NP_082355.1 2010111I01Rik gene product M. musculus 79.6 822
NP_001116730.1 aminopeptidase O D. rerio 64.4 780
NP_001083560.1 chromosome 9 open reading frame 3 X. laevis 55.2 277
Other hits (2 of 21) [Show all]SpeciesId(%)Len(aa)
XP_003951527.1 PREDICTED: aminopeptidase O P. troglodytes 99.3 818
XP_001105417.2 PREDICTED: aminopeptidase O M. mulatta 94.2 1251

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: uncharacterized tissue; mixed; uterus; brain; ovary; testis; pancreas; placenta; intestine; kidney; lung; embryonic tissue; vascular; mammary gland; muscle; prostate; skin; mouth; eye; blood; connective tissue; adrenal gland; thyroid; bladder; ascites; bone; liver; stomach; trachea; pharynx; salivary gland; heart; parathyroid; larynx; thymus; spleen; esophagus
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 9
Map position: 9q22.32
UniSTS entry: Chr 9 RH18210 [Map Viewer]
UniSTS entry: Chr 9 G20840
UniSTS entry: Chr 9 A006I15 [Map Viewer]
UniSTS entry: Chr 9 RH41810 [Map Viewer]
UniSTS entry: Chr 9 G29150
UniSTS entry: Chr 9 RH80162
UniSTS entry: Chr 9 SHGC-32587 [Map Viewer]
UniSTS entry: Chr 9 RH47933 [Map Viewer]
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (12)

BX648970.1 Homo sapiens mRNA; cDNA DKFZp686N0860 (from clone DKFZp686N0860) PA
AL137535.1 Homo sapiens mRNA; cDNA DKFZp434H2019 (from clone DKFZp434H2019) A
AJ560639.1 Homo sapiens mRNA for aminopeptidase O (APO gene) P
AK027581.1 Homo sapiens cDNA FLJ14675 fis, clone NT2RP2003952, weakly similar to AMINOPEPTIDASE B (EC 3.4.11.6) P
NM_032823.5 Homo sapiens chromosome 9 open reading frame 3 (C9orf3), transcript variant 2, mRNA PA
AK057450.1 Homo sapiens cDNA FLJ32888 fis, clone TESTI2004295, weakly similar to AMINOPEPTIDASE B (EC 3.4.11.6) P
BC020194.1 Homo sapiens chromosome 9 open reading frame 3, mRNA (cDNA clone MGC:31762 IMAGE:5020674), complete cds PA
BC029616.1 Homo sapiens chromosome 9 open reading frame 3, mRNA (cDNA clone MGC:9508 IMAGE:3877098), complete cds PA
AK098242.1 Homo sapiens cDNA FLJ40923 fis, clone UTERU2006400 P
AK300486.1 Homo sapiens cDNA FLJ52757 complete cds, highly similar to Aminopeptidase O (EC 3.4.11.-) P
NM_001193331.2 Homo sapiens chromosome 9 open reading frame 3 (C9orf3), transcript variant 4, mRNA P
NM_001193329.1 Homo sapiens chromosome 9 open reading frame 3 (C9orf3), transcript variant 1, mRNA P

Model sequences (3)

XR_108980.3 PREDICTED: Homo sapiens uncharacterized LOC100507319 (LOC100507319), misc_RNA A
XR_113239.3 PREDICTED: Homo sapiens uncharacterized LOC100507319 (LOC100507319), misc_RNA A
XR_171798.1 PREDICTED: Homo sapiens uncharacterized LOC100507319 (LOC100507319), misc_RNA A

EST sequences (10 of 362) [Show all sequences]

AI016041.1 Clone IMAGE:1636180 kidney 3' read A
AI023112.1 Clone IMAGE:1650544 parathyroid 3' read A
AI023756.1 Clone IMAGE:1655005 mixed 3' read
AI093228.1 Clone IMAGE:1695251 uterus 3' read A
AI095834.1 Clone IMAGE:1697355 uterus 3' read A
AI096813.1 Clone IMAGE:1698269 uterus 3' read A
AI126076.1 Clone IMAGE:1736369 testis 3' read P
AI126516.1 Clone IMAGE:1713155 uterus 3' read A
AI128393.1 Clone IMAGE:1714079 placenta 3' read A
AI128666.1 Clone IMAGE:1691188 heart 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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