> Trafficking protein particle complex 5 (TRAPPC5)
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UGID:228189     UniGene Hs.432413     Homo sapiens (human)   TRAPPC5 Order cDNA clone, Links
Trafficking protein particle complex 5 (TRAPPC5)

Human protein-coding gene TRAPPC5. Represented by 292 ESTs from 107 cDNA libraries. Corresponds to 3 reference sequences (different isoforms). [UniGene 228189 - Hs.432413]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_079977.3 Trappc5 gene product M. musculus 100.0 187
NP_001102320.1 Trappc5 gene product R. norvegicus 100.0 187
XP_003914843.1 PREDICTED: trafficking protein particle complex subunit 5 P. anubis 100.0 187
NP_001124476.1 TRAPPC5 gene product P. troglodytes 100.0 187
NP_777554.1 TRAPPC5 gene product H. sapiens 100.0 187
XP_003123195.1 PREDICTED: trafficking protein particle complex subunit 5-like isoform 1 S. scrofa 100.0 187
NP_001071317.1 TRAPPC5 gene product B. taurus 100.0 187
XP_004008607.1 PREDICTED: LOW QUALITY PROTEIN: trafficking protein particle complex subunit 5 O. aries 100.0 187
XP_002801508.1 PREDICTED: trafficking protein particle complex subunit 5-like, partial M. mulatta 100.0 138
NP_001002482.1 trappc5 gene product D. rerio 83.5 187
NP_001086495.1 trafficking protein particle complex 5 X. laevis 83.0 187
NP_610986.1 CG10153 D. melanogaster 72.7 187
NP_496593.1 Protein Y57A10A.16 C. elegans 58.7 179
NP_200611.1 Transport protein particle (TRAPP) component A. thaliana 54.1 183
Other hits (2 of 37) [Show all]SpeciesId(%)Len(aa)
XP_003432839.1 PREDICTED: trafficking protein particle complex subunit 5 isoform 1 C. lupus familiaris 99.5 187
XP_001366261.1 PREDICTED: trafficking protein particle complex subunit 5-like M. domestica 92.0 187

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: lung; brain; mixed; blood; eye; prostate; embryonic tissue; skin; testis; mammary gland; adrenal gland; kidney; bladder; pancreas; placenta; intestine; uncharacterized tissue; heart; uterus; ovary; lymph node; muscle; salivary gland; stomach; liver; spleen; bone; ascites; connective tissue
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 19
Map position: 19p13.2
UniSTS entry: Chr 19 RH47627
UniSTS entry: Chr 19 RH41788 [Map Viewer]
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (6)

BC042161.1 Homo sapiens trafficking protein particle complex 5, mRNA (cDNA clone MGC:52424 IMAGE:4869377), complete cds PA
NM_001042462.1 Homo sapiens trafficking protein particle complex 5 (TRAPPC5), transcript variant 3, mRNA PA
NM_001042461.2 Homo sapiens trafficking protein particle complex 5 (TRAPPC5), transcript variant 2, mRNA PA
NM_174894.2 Homo sapiens trafficking protein particle complex 5 (TRAPPC5), transcript variant 1, mRNA PA
AK292001.1 Homo sapiens cDNA FLJ75042 complete cds, highly similar to Homo sapiens trafficking protein particle complex 5, mRNA P
BC022836.1 Homo sapiens trafficking protein particle complex 5, mRNA (cDNA clone IMAGE:4891545), with apparent retained intron PA

EST sequences (10 of 292) [Show all sequences]

AA864360.1 Clone IMAGE:1470473 uncharacterized tissue 3' read
AA907033.1 Clone IMAGE:1505755 mixed 3' read
AA910419.1 Clone IMAGE:1505755 mixed 3' read
AA976189.1 Clone IMAGE:1558516 lung 3' read
AA886294.1 Clone IMAGE:1501850 kidney 3' read
AA922924.1 Clone IMAGE:1457407 intestine 3' read
AI002423.1 Clone IMAGE:1601976 lung 3' read
AI014461.1 Clone IMAGE:1607465 mammary gland 3' read
AA909262.1 Clone IMAGE:1542840 mixed 3' read
AI037887.1 Clone IMAGE:1664705 skin 3' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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