> Chloride channel, nucleotide-sensitive, 1A (CLNS1A)
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UGID:227619     UniGene Hs.430733     Homo sapiens (human)   CLNS1A Order cDNA clone, Links
Chloride channel, nucleotide-sensitive, 1A (CLNS1A)

Human protein-coding gene CLNS1A. Represented by 525 ESTs from 231 cDNA libraries. Corresponds to reference sequence NM_001293.2. [UniGene 227619 - Hs.430733]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_003910506.1 PREDICTED: methylosome subunit pICln P. anubis 100.0 236
XP_001175051.1 PREDICTED: uncharacterized protein LOC748896 isoform 2 P. troglodytes 100.0 236
NP_001284.1 CLNS1A gene product H. sapiens 100.0 236
XP_001088333.1 PREDICTED: methylosome subunit pICln M. mulatta 100.0 202
NP_076160.1 Clns1a gene product M. musculus 95.4 238
NP_001084804.1 chloride channel, nucleotide-sensitive, 1A X. laevis 75.4 239
NP_571499.2 icln gene product D. rerio 72.7 248
Other hits (2 of 19) [Show all]SpeciesId(%)Len(aa)
NP_001164498.1 methylosome subunit pICln O. cuniculus 97.9 235
XP_003482618.1 PREDICTED: methylosome subunit pICln-like S. scrofa 97.5 236

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: larynx; brain; uncharacterized tissue; embryonic tissue; placenta; ovary; eye; uterus; pharynx; liver; lung; kidney; testis; prostate; vascular; spleen; intestine; bladder; bone; mammary gland; stomach; thymus; ear; connective tissue; mouth; ascites; lymph node; skin; mixed; muscle; thyroid; pancreas; lymph; cervix; blood; esophagus; adrenal gland; heart; pineal gland
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 11
Map position: 11q13.5-q14
UniSTS entry: Chr 11 WI-20222 [Map Viewer]
UniSTS entry: Chr 11 A006P03
UniSTS entry: Chr 11 SHGC-31540 [Map Viewer]
UniSTS entry: Chr 1 RH69511
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (10)

NM_001293.2 Homo sapiens chloride channel, nucleotide-sensitive, 1A (CLNS1A), mRNA PA
BT019907.1 Homo sapiens chloride channel, nucleotide-sensitive, 1A mRNA, complete cds P
X91788.1 H.sapiens mRNA for Icln protein P
BC119635.1 Homo sapiens chloride channel, nucleotide-sensitive, 1A, mRNA (cDNA clone MGC:149488 IMAGE:40115655), complete cds P
BC119634.1 Homo sapiens chloride channel, nucleotide-sensitive, 1A, mRNA (cDNA clone MGC:149487 IMAGE:40115653), complete cds P
U17899.1 Human chloride channel regulatory protein mRNA, complete cds P
U53454.1 Human chloride ion current inducer protein (CLCI) mRNA, complete cds P
AK315259.1 Homo sapiens cDNA, FLJ96264, Homo sapiens chloride channel, nucleotide-sensitive, 1A (CLNS1A),mRNA P
AF005422.1 Homo sapiens reticulocyte pICln mRNA, complete cds P
AF026003.1 Homo sapiens chloride ion current inducer protein (ICln) mRNA, complete cds P

EST sequences (10 of 525) [Show all sequences]

AI017437.1 Clone IMAGE:1635710 kidney 3' read A
CB044089.1 Clone IMAGE:3217611 intestine 3' read A
CB044090.1 Clone IMAGE:3217611 intestine 5' read P
CB054529.1 Clone IMAGE:3291473 brain 5' read
BX108121.1 Clone IMAGp998B051795_;_IMAGE:731428 testis A
AI206937.1 Clone IMAGE:1942881 uncharacterized tissue 3' read P
AI204508.1 Clone IMAGE:1754048 testis 3' read A
AI268134.1 Clone IMAGE:1911508 lung 3' read
CB164291.1 Clone L17N670205n1-29-H12 liver 5' read
CB109183.1 Clone L4SNU368-7-A11 liver 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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