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Finding cDNAs
UGID:225682     UniGene Hs.426463     Homo sapiens (human)   SNCAIP Order cDNA clone, Links
Synuclein, alpha interacting protein (SNCAIP)
SELECTED PROTEIN SIMILARITIES
Comparison of sequences in UniGene with selected protein reference sequences. The alignments can suggest function of a gene.
Reference ProteinSpeciesId(%)Len(aa)
NP_005451.2 synuclein alpha interacting protein H. sapiens 100.0 918
NP_080684.2 synuclein, alpha interacting protein M. musculus 91.4 913
NP_001107108.1 synuclein alpha interacting protein D. rerio 61.2 734

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; lung; testis; uterus; ovary; mouth; mixed; uncharacterized tissue; embryonic tissue; ganglia; lymph node; liver; spleen; heart; trachea; ear; connective tissue; muscle; intestine; larynx; eye; prostate
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 5
Map position: 5q23.1-q23.3
UniSTS entry: Chr 5 WI-13890
UniSTS entry: Chr 5 RH118488
UniSTS entry: Chr 5 (n/a)
UniSTS entry: Chr 5 SHGC-58617
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (19)

NM_005460.2 Homo sapiens synuclein, alpha interacting protein (SNCAIP), mRNA P
AK001617.1 Homo sapiens cDNA FLJ10755 fis, clone NT2RP3004569, weakly similar to ANKYRIN, BRAIN VARIANT 1 P
AB110794.1 Homo sapiens SNCAIP mRNA for synphilin-1g protein, transcript variant g, complete cds P
AB110793.1 Homo sapiens SNCAIP mRNA for synphilin-1f protein, transcript variant f, complete cds P
AB110792.1 Homo sapiens SNCAIP mRNA for synphilin-1e protein, transcript variant e, complete cds P
AB110791.1 Homo sapiens SNCAIP mRNA for synphilin-1d protein, transcript variant d, complete cds P
AB110790.1 Homo sapiens SNCAIP mRNA for synphilin-1c protein, transcript variant c, complete cds P
AB110789.1 Homo sapiens SNCAIP mRNA for synphilin-1b protein, transcript variant b, complete cds P
AB110788.1 Homo sapiens SNCAIP mRNA for synphilin-1a protein, transcript variant a, complete cds P
AF076929.1 Homo sapiens synphilin 1 mRNA, complete cds PA
BC094759.1 Homo sapiens synuclein, alpha interacting protein, mRNA (cDNA clone MGC:104635 IMAGE:4838145), complete cds PA
AK021944.1 Homo sapiens cDNA FLJ11882 fis, clone HEMBA1007151, highly similar to Synphilin-1 P
DQ227317.1 Homo sapiens synphilin-1A (SNCAIP) mRNA, complete cds PA
AK310835.1 Homo sapiens cDNA, FLJ17877 P
BC033743.1 Homo sapiens synuclein, alpha interacting protein, mRNA (cDNA clone MGC:45239 IMAGE:5193089), complete cds PA
AK304646.1 Homo sapiens cDNA FLJ56291 complete cds, highly similar to Synphilin-1 P
AK299687.1 Homo sapiens cDNA FLJ61370 complete cds, highly similar to Synphilin-1 P
AK298882.1 Homo sapiens cDNA FLJ56226 complete cds, highly similar to Synphilin-1 P
BC040552.1 Homo sapiens synuclein, alpha interacting protein, mRNA (cDNA clone MGC:39814 IMAGE:5298588), complete cds PA

EST sequences (10 of 149) [Show all sequences]

AA973486.1 Clone IMAGE:1569137 lung 3' read A
AA977674.1 Clone IMAGE:1558357 lung 3' read A
AA992624.1 Clone IMAGE:1623154 embryonic tissue 3' read PA
AA905051.1 Clone IMAGE:1523309 mixed 3' read A
BX117120.1 Clone IMAGp998E241853_;_IMAGE:753791 mixed P
AI247699.1 Clone IMAGE:1849124 mixed 3' read
AI248035.1 Clone IMAGE:1849383 mixed 3' read
R35264.1 Clone IMAGE:37424 brain 5' read P
AI375485.1 Clone IMAGE:2066157 embryonic tissue 3' read A
R50935.1 Clone IMAGE:37424 brain 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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