> Hypoxia inducible factor 3, alpha subunit (HIF3A)
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UGID:224339     UniGene Hs.420830     Homo sapiens (human)   HIF3A Order cDNA clone, Links
Hypoxia inducible factor 3, alpha subunit (HIF3A)

Human protein-coding gene HIF3A. Represented by 188 ESTs from 91 cDNA libraries. Corresponds to 4 reference sequences (different isoforms). [UniGene 224339 - Hs.420830]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_690007.1 HIF3A gene product H. sapiens 100.0 666
XP_001167523.1 PREDICTED: hypoxia-inducible factor 3-alpha isoform 4 P. troglodytes 99.5 666
NP_001156422.1 Hif3a gene product M. musculus 89.9 662
NP_956527.1 hif1ab gene product D. rerio 60.0 350
NP_001086426.1 hypoxia-inducible factor 1 alpha X. laevis 55.6 567
Other hits (2 of 31) [Show all]SpeciesId(%)Len(aa)
XP_003915797.1 PREDICTED: hypoxia-inducible factor 3-alpha P. anubis 98.6 631
XP_001108464.2 PREDICTED: hypoxia-inducible factor 3-alpha-like isoform 1 M. mulatta 97.8 668

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; placenta; mixed; embryonic tissue; spleen; uncharacterized tissue; lung; uterus; intestine; heart; muscle; prostate; testis; eye; kidney; adipose tissue; mouth; vascular; esophagus; liver; ovary; pancreas; nerve; umbilical cord; connective tissue; pituitary gland
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 19
Map position: 19q13.32
UniSTS entry: Chr 19 D4S2902
UniSTS entry: Chr 19 D19S666E [Map Viewer]
UniSTS entry: Chr 19 D12S1977
UniSTS entry: Chr 19 RH68490 [Map Viewer]
UniSTS entry: Chr 1 L17809
UniSTS entry: Chr 1 L17877
UniSTS entry: Chr 1 G44334
UniSTS entry: Chr 1 D11S3114
UniSTS entry: Chr 19 STS-AA027108 [Map Viewer]
UniSTS entry: Chr 1 D17S610
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (15)

BC080551.1 Homo sapiens hypoxia inducible factor 3, alpha subunit, mRNA (cDNA clone MGC:99497 IMAGE:6250259), complete cds PA
AB118749.1 Homo sapiens HIF-3A4 mRNA for hypoxia-inducible factor-3 alpha 4, complete cds P
AK021421.1 Homo sapiens cDNA FLJ11359 fis, clone HEMBA1000216, moderately similar to HYPOXIA-INDUCIBLE FACTOR 1 ALPHA P
AK021737.1 Homo sapiens cDNA FLJ11675 fis, clone HEMBA1004751
AK021881.1 Homo sapiens cDNA FLJ11819 fis, clone HEMBA1006426
NM_022462.4 Homo sapiens hypoxia inducible factor 3, alpha subunit (HIF3A), transcript variant 2, mRNA PA
AB054067.1 Homo sapiens HIF-3A mRNA for hypoxia-inducible factor-3 alpha, complete cds P
AK314680.1 Homo sapiens cDNA, FLJ95531, highly similar to Homo sapiens hypoxia inducible factor 3, alpha subunit (HIF3A), transcript variant 1, mRNA P
AB295039.1 Homo sapiens HIF-3A2 mRNA for hypoxia-inducible factor-3alpha2, complete cds P
AK299699.1 Homo sapiens cDNA FLJ58491 complete cds, highly similar to Homo sapiens hypoxia inducible factor 3, alpha subunit (HIF3A), transcript variant 3, mRNA PA
AK297828.1 Homo sapiens cDNA FLJ61323 complete cds, highly similar to Homo sapiens hypoxia inducible factor 3, alpha subunit (HIF3A), transcript variant 3, mRNA P
AF079154.1 Homo sapiens hypoxia-inducible factor 3 alpha subunit (HIF3A) mRNA, partial cds P
NM_152796.2 Homo sapiens hypoxia inducible factor 3, alpha subunit (HIF3A), transcript variant 4, mRNA PA
NM_152795.3 Homo sapiens hypoxia inducible factor 3, alpha subunit (HIF3A), transcript variant 3, mRNA PA
NM_152794.3 Homo sapiens hypoxia inducible factor 3, alpha subunit (HIF3A), transcript variant 1, mRNA PA

EST sequences (10 of 188) [Show all sequences]

AA955026.1 Clone IMAGE:1591360 kidney 3' read
AA991677.1 Clone IMAGE:1622003 embryonic tissue 3' read
AA993264.1 Clone IMAGE:1623932 embryonic tissue 3' read
AI075316.1 Clone IMAGE:1672962 mixed 3' read
AI091960.1 Clone IMAGE:1691063 heart 3' read
AI123844.1 Clone IMAGE:1692518 heart 3' read
BX109724.1 Clone IMAGp998P23393_;_IMAGE:203782 mixed A
AI193777.1 Clone IMAGE:1745254 lung 3' read A
AI264183.1 Clone IMAGE:1857072 mixed 3' read
AI281985.1 Clone IMAGE:1882469 lung 3' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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