> Collagen, type VI, alpha 2 (COL6A2)
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UGID:224176     UniGene Hs.420269     Homo sapiens (human)   COL6A2 Order cDNA clone, Links
Collagen, type VI, alpha 2 (COL6A2)

Human protein-coding gene COL6A2. Represented by 1631 ESTs from 280 cDNA libraries. Corresponds to 3 reference sequences (different isoforms). [UniGene 224176 - Hs.420269]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_531504.3 PREDICTED: collagen alpha-2(VI) chain isoform 3 P. troglodytes 100.0 1018
NP_001840.3 COL6A2 gene product H. sapiens 100.0 1018
NP_666119.1 Col6a2 gene product M. musculus 95.3 1029
NP_001089228.1 uncharacterized protein LOC734275 precursor X. laevis 76.7 1005
XP_696164.2 PREDICTED: collagen alpha-2(VI) chain D. rerio 71.7 1010
NP_001255858.1 Protein COL-135, isoform b C. elegans 48.1 519
NP_001247141.1 CG42342, isoform J D. melanogaster 46.0 422
Other hits (2 of 40) [Show all]SpeciesId(%)Len(aa)
XP_003895406.1 PREDICTED: collagen alpha-2(VI) chain P. anubis 99.3 1018
XP_001099130.2 PREDICTED: collagen alpha-2(VI) chain-like isoform 3 M. mulatta 99.0 1028

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: embryonic tissue; lung; placenta; bone; testis; uterus; brain; prostate; skin; eye; connective tissue; uncharacterized tissue; heart; intestine; mixed; pancreas; ovary; kidney; mammary gland; stomach; salivary gland; thymus; epididymis; mouth; spleen; nerve; liver; adipose tissue; adrenal gland; bone marrow; larynx; ganglia; thyroid; esophagus; trachea; bladder; blood; lymph node
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 21
Map position: 21q22.3
UniSTS entry: Chr 21 GDB:185152
UniSTS entry: Chr 21 RH80325
UniSTS entry: Chr 21 GDB:192315
UniSTS entry: Chr 21 PMC34700P2
UniSTS entry: Chr 21 COL6A2_4061
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (14)

BT006913.1 Homo sapiens collagen, type VI, alpha 2 mRNA, complete cds P
BC065509.1 Homo sapiens collagen, type VI, alpha 2, mRNA (cDNA clone MGC:74769 IMAGE:5723962), complete cds PA
CR536573.1 Homo sapiens full open reading frame cDNA clone RZPDo834D0422D for gene COL6A2, collagen, type VI, alpha 2; complete cds, incl. stopcodon P
AL360197.1 Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 740696 PA
BC002484.2 Homo sapiens collagen, type VI, alpha 2, mRNA (cDNA clone IMAGE:3347413), complete cds PA
AY029208.1 Homo sapiens type VI collagen alpha 2 chain precursor (COL6A2) mRNA, complete cds, alternatively spliced PA
NM_001849.3 Homo sapiens collagen, type VI, alpha 2 (COL6A2), transcript variant 2C2, mRNA PA
NM_058175.2 Homo sapiens collagen, type VI, alpha 2 (COL6A2), transcript variant 2C2a', mRNA PA
NM_058174.2 Homo sapiens collagen, type VI, alpha 2 (COL6A2), transcript variant 2C2a, mRNA PA
M34573.1 Human alpha-2 collagen type VI-a' gene, exon 1. P
AK093995.1 Homo sapiens cDNA FLJ36676 fis, clone UTERU2004807, highly similar to Collagen alpha 2(VI) chain precursor P
X15977.1 Human mRNA for collagen VI alpha-2 alternative C-terminal domain P
X06195.1 Human mRNA for collagen alpha 2 (VI) chain 5' region
M34570.1 Human alpha-2 collagen type VI mRNA, 3' end P

EST sequences (10 of 1631) [Show all sequences]

AA954341.1 Clone IMAGE:1560444 intestine 3' read A
AA922713.1 Clone IMAGE:1474430 intestine 3' read A
AA974251.1 Clone IMAGE:1585943 uncharacterized tissue 3' read A
AA977461.1 Clone IMAGE:1591163 kidney 3' read
AI002190.1 Clone IMAGE:1593139 kidney 3' read
AA905138.1 Clone IMAGE:1523375 mixed 3' read A
AI018639.1 Clone IMAGE:1631013 mammary gland 3' read A
AI023356.1 Clone IMAGE:1651522 skin 3' read
AI028720.1 Clone IMAGE:1644813 testis 3' read
AA928714.1 Clone IMAGE:1560134 intestine 3' read PA


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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