> Vacuolar protein sorting 28 homolog (S. cerevisiae) (VPS28)
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UGID:223535     UniGene Hs.418175     Homo sapiens (human)   VPS28 Order cDNA clone, Links
Vacuolar protein sorting 28 homolog (S. cerevisiae) (VPS28)

Human protein-coding gene VPS28. Represented by 607 ESTs from 281 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 223535 - Hs.418175]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_898880.1 VPS28 gene product H. sapiens 100.0 232
XP_001092600.1 PREDICTED: vacuolar protein sorting-associated protein 28 homolog isoform 3 M. mulatta 100.0 220
XP_003903325.1 PREDICTED: vacuolar protein sorting-associated protein 28 homolog P. anubis 100.0 220
XP_520017.4 PREDICTED: vacuolar protein sorting-associated protein 28 homolog P. troglodytes 99.5 224
NP_080118.1 Vps28 gene product M. musculus 99.5 220
NP_001123964.1 Vps28 gene product R. norvegicus 99.5 220
XP_001505046.1 PREDICTED: vacuolar protein sorting-associated protein 28 homolog E. caballus 99.5 220
XP_001927493.1 PREDICTED: vacuolar protein sorting-associated protein 28 homolog S. scrofa 99.5 220
NP_001030581.1 VPS28 gene product B. taurus 99.5 220
NP_001080785.1 vacuolar protein sorting 28 homolog X. laevis 94.6 220
NP_956884.1 vps28 gene product D. rerio 91.0 222
NP_652053.1 vacuolar protein sorting 28, isoform A D. melanogaster 69.9 209
NP_493382.1 Protein VPS-28, isoform a C. elegans 47.3 201
Other hits (2 of 30) [Show all]SpeciesId(%)Len(aa)
XP_849245.2 PREDICTED: vacuolar protein sorting-associated protein 28 homolog isoform 1 C. lupus familiaris 99.1 220
XP_001364777.1 PREDICTED: vacuolar protein sorting-associated protein 28 homolog M. domestica 97.3 220

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; mixed; lung; uncharacterized tissue; skin; pancreas; ovary; testis; pharynx; spleen; eye; blood; thymus; heart; embryonic tissue; intestine; placenta; mammary gland; muscle; uterus; prostate; liver; parathyroid; kidney; lymph node; pituitary gland; bone marrow; connective tissue; adrenal gland; mouth; thyroid; bladder; stomach; cervix; trachea; larynx; esophagus; ascites; bone; adipose tissue; ganglia; nerve; vascular; pineal gland; umbilical cord
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 8
Map position: 8q24.3
UniSTS entry: Chr 8 RH16000
UniSTS entry: Chr 8 A006J21
UniSTS entry: Chr 8 MARC_23623-23624:1027527533:1
UniSTS entry: Chr 1 D10S16
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (10)

BC050713.2 Homo sapiens vacuolar protein sorting 28 homolog (S. cerevisiae), mRNA (cDNA clone MGC:60323 IMAGE:5741129), complete cds PA
BC050712.1 Homo sapiens vacuolar protein sorting 28 homolog (S. cerevisiae), mRNA (cDNA clone IMAGE:5188705), containing frame-shift errors PA
NM_183057.1 Homo sapiens vacuolar protein sorting 28 homolog (S. cerevisiae) (VPS28), transcript variant 2, mRNA PA
NM_016208.2 Homo sapiens vacuolar protein sorting 28 homolog (S. cerevisiae) (VPS28), transcript variant 1, mRNA PA
AF182844.1 Homo sapiens VPS28 protein mRNA, complete cds PA
AK026865.1 Homo sapiens cDNA: FLJ23212 fis, clone ADSU01518, highly similar to AF182844 Homo sapiens VPS28 protein mRNA PA
AF316887.1 Homo sapiens vacuolar sorting protein 28 (VPS28) mRNA, complete cds PA
BC006485.1 Homo sapiens vacuolar protein sorting 28 homolog (S. cerevisiae), mRNA (cDNA clone MGC:695 IMAGE:3535787), complete cds PA
BC019321.1 Homo sapiens vacuolar protein sorting 28 homolog (S. cerevisiae), mRNA (cDNA clone MGC:4362 IMAGE:2822758), complete cds PA
AK310062.1 Homo sapiens cDNA, FLJ17104

EST sequences (10 of 607) [Show all sequences]

AA864986.1 Clone IMAGE:1456511 kidney 3' read A
AA922411.1 Clone IMAGE:1486386 mouth 3' read
AA983592.1 Clone IMAGE:1559243 intestine 3' read
AA991400.1 Clone IMAGE:1608978 mammary gland 3' read
AA991703.1 Clone IMAGE:1622039 embryonic tissue 3' read PA
AA995342.1 Clone IMAGE:1604879 lung 3' read A
AI003886.1 Clone IMAGE:1621810 testis 3' read PA
AI016156.1 Clone IMAGE:1622434 embryonic tissue 3' read
AA927566.1 Clone IMAGE:1552633 uncharacterized tissue 3' read A
AI023014.1 Clone IMAGE:1650941 parathyroid 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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