> Chloride intracellular channel 1 (CLIC1)
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UGID:222550     UniGene Hs.414565     Homo sapiens (human)   CLIC1 Order cDNA clone, Links
Chloride intracellular channel 1 (CLIC1)

Human protein-coding gene CLIC1. Represented by 1766 ESTs from 428 cDNA libraries. Corresponds to reference sequence NM_001288.4. [UniGene 222550 - Hs.414565]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001037092.1 chloride intracellular channel protein B. mori 100.0 240
XP_003897406.1 PREDICTED: chloride intracellular channel protein 1 isoform 1 P. anubis 100.0 240
XP_518357.2 PREDICTED: chloride intracellular channel protein 1 isoform 4 P. troglodytes 100.0 240
NP_001279.2 CLIC1 gene product H. sapiens 100.0 240
NP_254279.1 chloride intracellular channel protein 1 M. musculus 99.6 240
NP_001002807.1 Clic1 gene product R. norvegicus 99.6 240
NP_001239067.1 CLIC1 gene product C. lupus familiaris 99.6 240
NP_997847.1 clic1 gene product D. rerio 80.9 240
NP_001082687.1 chloride intracellular channel 1 X. laevis 80.4 239
Other hits (2 of 20) [Show all]SpeciesId(%)Len(aa)
XP_001491405.1 PREDICTED: chloride intracellular channel protein 1-like E. caballus 99.2 240
NP_001015608.1 CLIC1 gene product B. taurus 99.2 240

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: skin; pancreas; lung; intestine; mixed; embryonic tissue; brain; liver; stomach; uterus; placenta; prostate; blood; uncharacterized tissue; kidney; mammary gland; bone; heart; ascites; eye; salivary gland; lymph node; tonsil; amniotic fluid; epididymis; trachea; pharynx; ovary; vascular; testis; connective tissue; bone marrow; spleen; cervix; bladder; mouth; nerve; parathyroid; lymph; muscle; thymus; thyroid; adrenal gland; esophagus; larynx; umbilical cord; adipose tissue; ganglia; pituitary gland
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 6
Map position: 6p21.3
UniSTS entry: Chr 12 CLIC1
UniSTS entry: Chr 6 RH65001
UniSTS entry: Chr 6 STS-W60956
UniSTS entry: Chr 6 G43219
UniSTS entry: RH68194
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (11)

AK129773.1 Homo sapiens cDNA FLJ26262 fis, clone DMC05261, highly similar to Chloride intracellular channel protein 1 P
NM_001288.4 Homo sapiens chloride intracellular channel 1 (CLIC1), mRNA PA
BC064527.1 Homo sapiens chloride intracellular channel 1, mRNA (cDNA clone MGC:74817 IMAGE:5585323), complete cds PA
CR542071.1 Homo sapiens full open reading frame cDNA clone RZPDo834G0736D for gene CLIC1, chloride intracellular channel 1; complete cds, without stopcodon P
AF034607.1 Homo sapiens chloride channel ABP mRNA, complete cds PA
AF109197.1 Homo sapiens nuclear chloride channel (NCC27) mRNA, complete cds P
AK223379.1 Homo sapiens mRNA for chloride intracellular channel 1 variant, clone: FCC106B04 P
BC095469.1 Homo sapiens chloride intracellular channel 1, mRNA (cDNA clone MGC:111374 IMAGE:30557606), complete cds PA
AK314014.1 Homo sapiens cDNA, FLJ94671, Homo sapiens chloride intracellular channel 1 (CLIC1), mRNA P
X87689.1 H.sapiens mRNA for putative p64 CLCP protein PA
U93205.1 Homo sapiens nuclear chloride ion channel protein (NCC27) mRNA, complete cds PA

EST sequences (10 of 1766) [Show all sequences]

AA969549.1 Clone IMAGE:1576309 intestine 3' read A
AA976377.1 Clone IMAGE:1591490 kidney 3' read
AA985592.1 Clone IMAGE:1593000 kidney 3' read A
R15118.1 Clone IMAGE:29522 brain 5' read
AA987787.1 Clone IMAGE:1588846 kidney 3' read
AA989158.1 Clone IMAGE:1593509 kidney 3' read P
AA988267.1 Clone IMAGE:1605487 kidney 3' read
AA999863.1 Clone IMAGE:1636375 kidney 3' read
AI002086.1 Clone IMAGE:1619029 testis 3' read A
AI025141.1 Clone IMAGE:1631779 mammary gland 3' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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