> Family with sequence similarity 71, member D (FAM71D)
NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy
 Search
NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
MGC | ZGC | XGC
Finding cDNAs
UGID:222090     UniGene Hs.412818     Homo sapiens (human)   FAM71D Order cDNA clone, Links
Family with sequence similarity 71, member D (FAM71D)

Human protein-coding gene FAM71D. Represented by 18 ESTs from 12 cDNA libraries. Corresponds to reference sequence NM_173526.3. [UniGene 222090 - Hs.412818]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_775797.2 FAM71D gene product H. sapiens 100.0 421
NP_001080100.1 splicing factor 3b, subunit 4, 49kDa X. laevis 92.2 256
NP_705947.3 sf3b4 gene product D. rerio 90.8 273
NP_511058.1 spliceosomal protein on the X D. melanogaster 88.0 166
NP_001021932.1 Protein SAP-49 C. elegans 75.2 246
NP_179441.1 splicing factor 3B subunit 4 A. thaliana 74.4 160
XP_001696380.1 nuclear pre-mRNA splicing factor, component of splicing factor 3b C. reinhardtii 69.0 242
NP_081873.2 uncharacterized protein LOC70897 isoform 2 M. musculus 65.7 391
XP_961142.1 hypothetical protein NCU04182 N. crassa 58.5 159
Other hits (2 of 55) [Show all]SpeciesId(%)Len(aa)
XP_001135797.2 PREDICTED: protein FAM71D P. troglodytes 97.4 421
XP_002191033.1 PREDICTED: splicing factor 3b, subunit 4, 49kDa T. guttata 94.8 231

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; testis; mixed; blood; intestine; thyroid; embryonic tissue
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 14
Map position: 14q23.3
UniSTS entry: Chr 14 AB070000
UniSTS entry: Chr 1 PMC193924P1
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (5)

NM_173526.3 Homo sapiens family with sequence similarity 71, member D (FAM71D), mRNA P
BC050401.1 Homo sapiens family with sequence similarity 71, member D, mRNA (cDNA clone MGC:52107 IMAGE:5745029), complete cds PA
AK093449.1 Homo sapiens cDNA FLJ36130 fis, clone TESTI2024560 P
AK302154.1 Homo sapiens cDNA FLJ51638 complete cds, moderately similar to Splicing factor 3B subunit 4 PA
BC037380.1 Homo sapiens chromosome 14 open reading frame 54, mRNA (cDNA clone IMAGE:5167592), partial cds PA

EST sequences (10 of 18) [Show all sequences]

R51501.1 Clone IMAGE:38675 brain 5' read P
BX341340.2 Clone CS0DJ015YA17 blood 5' read P
CD299634.1 Clone IMAGE:30400572 mixed 5' read A
BU101741.1 mixed P
BU101742.1 mixed P
CR741612.1 Clone IMAGp998B174417_;_IMAGE:1738288 testis 5' read
BE870784.1 Clone IMAGE:3850695 intestine 5' read
BE931823.1 thyroid P
DR762030.1 Clone IMAGE:7971705 embryonic tissue 5' read P
DB303381.1 Clone BRAMY3014127 brain 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help