> Ribosomal protein L13 (RPL13)
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UGID:221669     UniGene Hs.410817     Homo sapiens (human)   RPL13 Order cDNA clone, Links
Ribosomal protein L13 (RPL13)

Human protein-coding gene RPL13. Represented by 4300 ESTs from 602 cDNA libraries. Corresponds to 4 reference sequences (different isoforms). [UniGene 221669 - Hs.410817]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_058018.2 Rpl13 gene product M. musculus 100.0 210
NP_001091406.1 uncharacterized protein LOC100049095 X. laevis 100.0 210
XP_001092801.1 PREDICTED: 60S ribosomal protein L13-like isoform 1 M. mulatta 100.0 210
XP_003917374.1 PREDICTED: 60S ribosomal protein L13 P. anubis 100.0 210
XP_001141061.1 PREDICTED: 60S ribosomal protein L13 isoform 5 P. troglodytes 100.0 210
NP_150254.1 RPL13 gene product H. sapiens 100.0 210
XP_003434731.1 PREDICTED: 60S ribosomal protein L13 C. lupus familiaris 100.0 210
XP_001366584.1 PREDICTED: 60S ribosomal protein L13-like M. domestica 99.5 210
NP_937786.1 rpl13 gene product D. rerio 88.2 210
NP_523530.1 ribosomal protein L13, isoform A D. melanogaster 68.5 215
NP_001021017.1 Protein RPL-13, isoform a C. elegans 66.2 206
NP_197778.1 60S ribosomal protein L13-3 A. thaliana 64.1 205
XP_960516.1 60S ribosomal protein L13 N. crassa 57.9 213
XP_001692670.1 ribosomal protein L13, component of cytosolic 80S ribosome and 60S large subunit C. reinhardtii 55.8 216
NP_013862.1 ribosomal 60S subunit protein L13B S. cerevisiae 54.8 198
Other hits (2 of 55) [Show all]SpeciesId(%)Len(aa)
NP_001015543.1 RPL13 gene product B. taurus 99.0 210
NP_112363.1 Rpl13 gene product R. norvegicus 98.6 210

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; embryonic tissue; pancreas; lung; prostate; uncharacterized tissue; skin; liver; eye; mixed; uterus; lymph node; kidney; intestine; muscle; placenta; lymph; testis; ovary; mammary gland; tonsil; stomach; ascites; cervix; connective tissue; blood; spleen; bone; mouth; salivary gland; bone marrow; thymus; heart; pharynx; adrenal gland; nerve; pineal gland; umbilical cord; vascular; parathyroid; trachea; pituitary gland; larynx; bladder; esophagus; adipose tissue; thyroid; epididymis; ganglia; ear; peritoneum
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 16
Map position: 16q24.3|17p11.2
UniSTS entry: Chr 17 RH1656
UniSTS entry: Chr 17 D16S444E
UniSTS entry: Chr 16 SHGC-2485
UniSTS entry: Chr 16 SHGC-11987
UniSTS entry: Chr 16 HUM00KMB07 [Map Viewer]
UniSTS entry: Ot111
UniSTS entry: Chr 16 RH65713
UniSTS entry: Chr 16 D16S444E
UniSTS entry: MARC_7237-7238:996687675:1
UniSTS entry: fb15d05.x1
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (26)

AK127579.1 Homo sapiens cDNA FLJ45674 fis, clone D9OST2004417, highly similar to 60S ribosomal protein L13 P
NM_000977.3 Homo sapiens ribosomal protein L13 (RPL13), transcript variant 1, mRNA P
BC063378.1 Homo sapiens ribosomal protein L13, mRNA (cDNA clone MGC:71373 IMAGE:3542514), complete cds P
BC066320.1 Homo sapiens ribosomal protein L13, mRNA (cDNA clone MGC:87209 IMAGE:5300601), complete cds PA
BC093063.1 Homo sapiens ribosomal protein L13, mRNA (cDNA clone MGC:111169 IMAGE:30401947), complete cds P
BC106058.1 Homo sapiens ribosomal protein L13, mRNA (cDNA clone MGC:117342 IMAGE:4992467), complete cds P
BC004954.1 Homo sapiens ribosomal protein L13, mRNA (cDNA clone MGC:10897 IMAGE:3623320), complete cds P
BC007805.2 Homo sapiens ribosomal protein L13, mRNA (cDNA clone MGC:14332 IMAGE:4298327), complete cds PA
BC007563.1 Homo sapiens ribosomal protein L13, mRNA (cDNA clone MGC:15490 IMAGE:2989021), complete cds P
BC007345.2 Homo sapiens ribosomal protein L13, mRNA (cDNA clone MGC:15415 IMAGE:3688320), complete cds PA
BC010994.2 Homo sapiens ribosomal protein L13, mRNA (cDNA clone MGC:15073 IMAGE:3842093), complete cds PA
BC014167.2 Homo sapiens ribosomal protein L13, mRNA (cDNA clone MGC:20892 IMAGE:4550361), complete cds P
NM_033251.2 Homo sapiens ribosomal protein L13 (RPL13), transcript variant 2, mRNA P
BC013078.1 Homo sapiens ribosomal protein L13, mRNA (cDNA clone MGC:17534 IMAGE:3459415), complete cds PA
BC020804.1 Homo sapiens ribosomal protein L13, mRNA (cDNA clone MGC:23822 IMAGE:4276103), complete cds P
AK290893.1 Homo sapiens cDNA FLJ78590 complete cds P
AK308545.1 Homo sapiens cDNA, FLJ98586 P
BC027463.1 Homo sapiens ribosomal protein L13, mRNA (cDNA clone MGC:34920 IMAGE:5111302), complete cds PA
AB062392.1 Homo sapiens OK/SW-cl.46 mRNA for ribosomal protein L13, complete cds PA
X64707.1 H.sapiens BBC1 mRNA P
AK095954.1 Homo sapiens cDNA FLJ38635 fis, clone HHDPC2001896
AK297198.1 Homo sapiens cDNA FLJ53059 complete cds, moderately similar to 60S ribosomal protein L13 P
BC000851.1 Homo sapiens ribosomal protein L13, mRNA (cDNA clone IMAGE:3458439) P
AK025405.1 Homo sapiens cDNA: FLJ21752 fis, clone COLF6324, highly similar to HSBBC1 Homo sapiens BBC1 mRNA P
NM_001243131.1 Homo sapiens ribosomal protein L13 (RPL13), transcript variant 4, mRNA P
NM_001243130.1 Homo sapiens ribosomal protein L13 (RPL13), transcript variant 3, mRNA P

EST sequences (10 of 4300) [Show all sequences]

AA954103.1 Clone IMAGE:1591217 kidney 3' read
AA954110.1 Clone IMAGE:1591232 kidney 3' read
AA954194.1 Clone IMAGE:1575076 kidney 3' read
AA954849.1 Clone IMAGE:1574351 kidney 3' read
AA865046.1 Clone IMAGE:1459488 kidney 3' read P
AA866021.1 Clone IMAGE:1459363 kidney 3' read A
AA961450.1 Clone IMAGE:1599577 uncharacterized tissue 3' read
AA961748.1 Clone IMAGE:1600229 uncharacterized tissue 3' read A
AA906084.1 Clone IMAGE:1505740 mixed 3' read
AA907018.1 Clone IMAGE:1505740 mixed 3' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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