> SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 (SMARCAD1)
NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy
 Search
NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
MGC | ZGC | XGC
Finding cDNAs
UGID:221577     UniGene Hs.410406     Homo sapiens (human)   SMARCAD1 Order cDNA clone, Links
SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 (SMARCAD1)

Human protein-coding gene SMARCAD1. Represented by 215 ESTs from 125 cDNA libraries. Corresponds to 5 reference sequences (different isoforms). [UniGene 221577 - Hs.410406]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001121901.1 SMARCAD1 gene product H. sapiens 100.0 1027
XP_001163670.1 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform 2 P. troglodytes 100.0 1025
XP_002804185.1 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1-like isoform 1 M. mulatta 99.7 1027
NP_031984.1 Smarcad1 gene product M. musculus 96.0 1020
XP_691636.4 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1-like D. rerio 64.4 1009
NP_499301.2 Protein M03C11.8 C. elegans 54.3 538
NP_001033890.1 Etl1 homologue, isoform C D. melanogaster 54.1 615
NP_009383.1 Fun30p S. cerevisiae 50.2 533
XP_001701945.1 SNF2 superfamily protein C. reinhardtii 48.6 181
XP_956548.2 chromatin remodelling complex ATPase chain ISW1 N. crassa 47.6 452
NP_001086442.1 helicase, lymphoid-specific X. laevis 47.5 158
NP_178318.1 SNF2 and helicase domain-containing protein A. thaliana 46.4 537
Other hits (2 of 61) [Show all]SpeciesId(%)Len(aa)
XP_003899024.1 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 P. anubis 99.4 1025
XP_001497269.3 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform 2 E. caballus 98.8 1026

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; testis; placenta; eye; liver; vascular; embryonic tissue; lung; muscle; heart; pineal gland; adipose tissue; uncharacterized tissue; uterus; mixed; mouth; mammary gland; intestine; kidney; prostate; pancreas; blood; trachea; lymph; thymus; salivary gland; ear; cervix; esophagus; skin; stomach; bone; umbilical cord; lymph node; connective tissue; bone marrow; bladder
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 4
Map position: 4q22-q23
UniSTS entry: Chr 4 SHGC-68102 [Map Viewer]
UniSTS entry: Chr 4 WI-19794 [Map Viewer]
UniSTS entry: Chr 4 G33505
UniSTS entry: Chr 4 SHGC-68143 [Map Viewer]
UniSTS entry: Chr 4 PMC33171P1
UniSTS entry: Chr 4 SMARCAD1__v340
UniSTS entry: Chr 4 SHGC-24763 [Map Viewer]
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (16)

BC041800.1 Homo sapiens SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1, mRNA (cDNA clone IMAGE:5268349), with apparent retained intron PA
BC045534.1 Homo sapiens SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1, mRNA (cDNA clone MGC:57132 IMAGE:5267669), complete cds PA
AB032948.2 Homo sapiens KIAA1122 mRNA for KIAA1122 protein, partial cds PA
AL359929.1 Homo sapiens mRNA; cDNA DKFZp762K2015 (from clone DKFZp762K2015) PA
AK023990.1 Homo sapiens cDNA FLJ13928 fis, clone Y79AA1000705, moderately similar to M.musculus mRNA of enhancer-trap-locus 1 P
AK025302.1 Homo sapiens cDNA: FLJ21649 fis, clone COL08479 PA
AY008271.1 Homo sapiens helicase SMARCAD1 mRNA, complete cds PA
AL512768.1 Homo sapiens mRNA; cDNA DKFZp434A1710 (from clone DKFZp434A1710) PA
NM_020159.4 Homo sapiens SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 (SMARCAD1), transcript variant 3, mRNA PA
NM_001128430.1 Homo sapiens SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 (SMARCAD1), transcript variant 2, mRNA PA
NM_001128429.2 Homo sapiens SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 (SMARCAD1), transcript variant 1, mRNA PA
AK027490.1 Homo sapiens cDNA FLJ14584 fis, clone NT2RM4001592 P
BC017953.1 Homo sapiens SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1, mRNA (cDNA clone IMAGE:4592233), partial cds PA
AK301668.1 Homo sapiens cDNA FLJ58701 complete cds, highly similar to SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 (EC 3.6.1.-) P
NM_001254949.1 Homo sapiens SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 (SMARCAD1), transcript variant 4, mRNA PA
NR_045644.1 Homo sapiens SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 (SMARCAD1), transcript variant 5, non-coding RNA PA

EST sequences (10 of 215) [Show all sequences]

R14081.1 Clone IMAGE:27517 brain 5' read
AA976814.1 Clone IMAGE:1588306 uncharacterized tissue 3' read A
AA978276.1 Clone IMAGE:1579894 mixed 3' read A
AA983684.1 Clone IMAGE:1507743 mixed 3' read
AA994937.1 Clone IMAGE:1631515 mammary gland 3' read A
R18325.1 Clone IMAGE:30571 brain 5' read
AI097098.1 Clone IMAGE:1676087 embryonic tissue 3' read A
AI125921.1 Clone IMAGE:1712191 uterus 3' read A
BX092533.1 Clone IMAGp998M08281_;_IMAGE:49761 brain A
CB158983.1 Clone L18POOL1n1-29-A07 liver 5' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help