> Chromosome 16 open reading frame 87 (C16orf87)
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UGID:220157     UniGene Hs.406551     Homo sapiens (human)   C16orf87 Order cDNA clone, Links
Chromosome 16 open reading frame 87 (C16orf87)

Human protein-coding gene C16orf87. Represented by 171 ESTs from 71 cDNA libraries. Corresponds to reference sequence NM_001001436.2. [UniGene 220157 - Hs.406551]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_079998.1 4921524J17Rik gene product M. musculus 100.0 153
NP_001127893.1 RGD1308706 gene product R. norvegicus 100.0 153
XP_001113678.1 PREDICTED: UPF0547 protein C16orf87-like isoform 2 M. mulatta 100.0 153
NP_001001436.1 C16orf87 gene product H. sapiens 100.0 153
XP_002721615.1 PREDICTED: hypothetical protein O. cuniculus 100.0 153
XP_003355877.2 PREDICTED: UPF0547 protein C16orf87-like, partial S. scrofa 100.0 98
NP_001088366.1 UPF0547 protein C16orf87 homolog X. laevis 79.9 143
NP_001002512.1 zgc:92818 gene product D. rerio 77.6 151
Other hits (2 of 15) [Show all]SpeciesId(%)Len(aa)
XP_003364698.1 PREDICTED: UPF0547 protein C16orf87-like E. caballus 99.3 143
NP_001239063.1 uncharacterized protein LOC100856727 C. lupus familiaris 98.7 153

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: testis; brain; skin; uncharacterized tissue; muscle; bone marrow; salivary gland; pituitary gland; pharynx; embryonic tissue; adrenal gland; lung; placenta; pancreas; kidney; mixed; prostate; vascular; mammary gland; connective tissue; heart; bladder; uterus; blood; intestine; adipose tissue; ovary; cervix; ascites; lymph node
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 16
Map position: 16q11.2
UniSTS entry: Chr 16 RH78494
UniSTS entry: Chr 16 RPL36AL_8599
UniSTS entry: Chr 1 D10S16
UniSTS entry: Chr 1 D11S2921
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (3)

BX647945.1 Homo sapiens mRNA; cDNA DKFZp686C2051 (from clone DKFZp686C2051)
BC056676.1 Homo sapiens chromosome 16 open reading frame 87, mRNA (cDNA clone MGC:62018 IMAGE:6711353), complete cds PA
NM_001001436.2 Homo sapiens chromosome 16 open reading frame 87 (C16orf87), mRNA PA

EST sequences (10 of 171) [Show all sequences]

AI242243.1 Clone IMAGE:1964226 ovary 3' read
AI247764.1 Clone IMAGE:1848838 mixed 3' read A
AI365157.1 Clone IMAGE:2010418 uncharacterized tissue 3' read A
AI470958.1 Clone IMAGE:2139404 kidney 3' read A
AI743127.1 Clone IMAGE:2372108 mixed 3' read A
CB270325.1 adipose tissue 5' read P
AI859089.1 Clone IMAGE:2426702 uterus 3' read A
AI935434.1 Clone IMAGE:2462035 kidney 3' read
CB955968.1 Clone IMAGE:30352184 mixed 5' read
CB998831.1 Clone IMAGE:30320488 vascular 5' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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