> Lumican (LUM)
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UGID:220113     UniGene Hs.406475     Homo sapiens (human)   LUM Order cDNA clone, Links
Lumican (LUM)

Human protein-coding gene LUM. Represented by 1797 ESTs from 267 cDNA libraries. Corresponds to reference sequence NM_002345.3. [UniGene 220113 - Hs.406475]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_509260.3 PREDICTED: lumican isoform 2 P. troglodytes 100.0 337
NP_002336.1 LUM gene product H. sapiens 100.0 337
XP_001102667.1 PREDICTED: lumican isoform 1 M. mulatta 99.7 337
XP_003906991.1 PREDICTED: lumican P. anubis 99.7 337
NP_032550.2 Lum gene product M. musculus 93.2 337
NP_001079803.1 lumican precursor X. laevis 67.3 352
NP_001002059.1 lum gene product D. rerio 54.7 340
Other hits (2 of 18) [Show all]SpeciesId(%)Len(aa)
XP_539716.1 PREDICTED: lumican C. lupus familiaris 95.9 337
NP_001182609.1 lumican precursor O. cuniculus 95.9 337

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: placenta; connective tissue; uterus; lung; embryonic tissue; heart; intestine; pancreas; uncharacterized tissue; stomach; mixed; bone; skin; liver; eye; kidney; brain; pharynx; umbilical cord; thymus; larynx; amniotic fluid; testis; ganglia; mammary gland; cervix; esophagus; prostate; bladder; ovary; muscle; mouth; adrenal gland; blood; ear; salivary gland; lymph node; adipose tissue; bone marrow; pituitary gland; trachea; vascular; spleen; nerve; parathyroid
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 12
Map position: 12q21.3-q22
UniSTS entry: Chr 12 RH48690 [Map Viewer]
UniSTS entry: Chr 12 GDB:596270
UniSTS entry: Chr 12 RH18011 [Map Viewer]
UniSTS entry: Chr 12 RME09
UniSTS entry: Chr 12 SHGC-35342
UniSTS entry: Chr 12 RH44503 [Map Viewer]
UniSTS entry: Chr 1 D10S16
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (8)

BT006707.1 Homo sapiens lumican mRNA, complete cds P
NM_002345.3 Homo sapiens lumican (LUM), mRNA P
AK223177.1 Homo sapiens mRNA for lumican variant, clone: LNG15808 P
U18728.1 Human lumican mRNA, complete cds PA
BC007038.1 Homo sapiens lumican, mRNA (cDNA clone MGC:12410 IMAGE:3950745), complete cds PA
U21128.1 Human lumican mRNA, complete cds P
AK312682.1 Homo sapiens cDNA, FLJ93075, Homo sapiens lumican (LUM), mRNA P
BC035997.1 Homo sapiens lumican, mRNA (cDNA clone MGC:32797 IMAGE:4688606), complete cds PA

EST sequences (10 of 1797) [Show all sequences]

AA973256.1 Clone IMAGE:1536817 kidney 3' read A
AI005359.1 Clone IMAGE:1632249 mammary gland 3' read
AI015146.1 Clone IMAGE:1622170 embryonic tissue 3' read A
AI049509.1 Clone IMAGE:1699298 kidney 3' read A
AI052141.1 Clone IMAGE:1667347 parathyroid 3' read A
AI075646.1 Clone IMAGE:1664414 skin 3' read A
AI082065.1 Clone IMAGE:1678981 skin 3' read A
AI089346.1 Clone IMAGE:1695408 uterus 3' read A
AI089442.1 Clone IMAGE:1695436 uterus 3' read A
AI095592.1 Clone IMAGE:1697180 uterus 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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