> Splicing factor 3b, subunit 2, 145kDa (SF3B2)
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UGID:220093     UniGene Hs.406423     Homo sapiens (human)   SF3B2 Order cDNA clone, Links
Splicing factor 3b, subunit 2, 145kDa (SF3B2)

Human protein-coding gene SF3B2. Represented by 1204 ESTs from 407 cDNA libraries. Corresponds to reference sequence NM_006842.2. [UniGene 220093 - Hs.406423]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_508570.2 PREDICTED: splicing factor 3B subunit 2 isoform 3 P. troglodytes 100.0 894
NP_006833.2 SF3B2 gene product H. sapiens 100.0 894
XP_003909581.1 PREDICTED: splicing factor 3B subunit 2 P. anubis 100.0 892
XP_002799525.1 PREDICTED: splicing factor 3B subunit 2-like M. mulatta 99.5 874
NP_084385.2 splicing factor 3b, subunit 2 M. musculus 99.0 877
NP_001089415.1 splicing factor 3b, subunit 2, 145kDa X. laevis 89.7 730
NP_001098747.1 sf3b2 gene product D. rerio 84.6 824
NP_608739.1 CG3605, isoform A D. melanogaster 75.3 705
NP_503141.1 Protein W03F9.10 C. elegans 68.6 591
XP_001703008.1 nuclear pre-mRNA splicing factor, component of splicing factor 3b C. reinhardtii 64.2 443
NP_193897.2 splicing factor 3B subunit 2 A. thaliana 63.0 561
XP_963443.2 hypothetical protein NCU05452 N. crassa 58.2 471
Other hits (2 of 55) [Show all]SpeciesId(%)Len(aa)
XP_004019738.1 PREDICTED: splicing factor 3B subunit 2 O. aries 99.5 733
XP_001495241.1 PREDICTED: splicing factor 3B subunit 2 isoform 1 E. caballus 99.4 895

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; testis; lung; eye; embryonic tissue; uterus; uncharacterized tissue; mammary gland; liver; skin; intestine; thyroid; ovary; prostate; pancreas; placenta; kidney; lymph node; blood; muscle; mixed; bone; cervix; pharynx; bone marrow; stomach; larynx; connective tissue; lymph; thymus; amniotic fluid; mouth; tonsil; parathyroid; ear; ascites; heart; spinal cord; esophagus; ganglia; adrenal gland; spleen; bladder; pituitary gland; nerve; vascular; pineal gland; adipose tissue
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 11
Map position: 11q13.1
UniSTS entry: Chr 11 MARC_24069-24070:1030027541:1
UniSTS entry: RH47585
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (10)

BC051237.1 Homo sapiens splicing factor 3b, subunit 2, 145kDa, mRNA (cDNA clone IMAGE:6082816), **** WARNING: chimeric clone **** PA
BX537771.1 Homo sapiens mRNA; cDNA DKFZp781L0540 (from clone DKFZp781L0540) PA
BC053577.1 Homo sapiens splicing factor 3b, subunit 2, 145kDa, mRNA (cDNA clone IMAGE:4478742), partial cds PA
NM_006842.2 Homo sapiens splicing factor 3b, subunit 2, 145kDa (SF3B2), mRNA P
U41371.1 Human spliceosome associated protein (SAP 145) mRNA, complete cds PA
BC000401.2 Homo sapiens splicing factor 3b, subunit 2, 145kDa, mRNA (cDNA clone IMAGE:2822659), partial cds PA
BC007610.1 Homo sapiens splicing factor 3b, subunit 2, 145kDa, mRNA (cDNA clone MGC:15693 IMAGE:3351485), complete cds PA
BC014125.2 Homo sapiens splicing factor 3b, subunit 2, 145kDa, mRNA (cDNA clone IMAGE:4562562), partial cds PA
AK290850.1 Homo sapiens cDNA FLJ76788 complete cds, highly similar to Homo sapiens splicing factor 3b, subunit 2, 145kDa (SF3B2), mRNA P
AK300016.1 Homo sapiens cDNA FLJ56485 complete cds, highly similar to Splicing factor 3B subunit 2 PA

EST sequences (10 of 1204) [Show all sequences]

AA910349.1 Clone IMAGE:1520571 kidney 3' read PA
AA910983.1 Clone IMAGE:1519019 uncharacterized tissue 3' read A
AI022139.1 Clone IMAGE:1652006 mixed 3' read PA
R19295.1 Clone IMAGE:130017 mixed 3' read
AI075313.1 Clone IMAGE:1672956 mixed 3' read PA
AI081946.1 Clone IMAGE:1681784 skin 3' read PA
AI095351.1 Clone IMAGE:1666116 skin 3' read A
AI129457.1 Clone IMAGE:1712468 uterus 3' read PA
CB044567.1 Clone IMAGE:3217904 intestine 3' read A
CB044568.1 Clone IMAGE:3217904 intestine 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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