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UGID:219233     UniGene Hs.405153     Homo sapiens (human)   NOD1
Nucleotide-binding oligomerization domain containing 1 (NOD1)

Human protein-coding gene NOD1. Represented by 138 ESTs from 90 cDNA libraries. Corresponds to reference sequence NM_006092.2. [UniGene 219233 - Hs.405153]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_006083.1 NOD1 gene product H. sapiens 100.0 952
XP_001165528.1 PREDICTED: nucleotide-binding oligomerization domain-containing protein 1 isoform 2 P. troglodytes 99.7 952
NP_001164478.1 Nod1 gene product M. musculus 83.6 952
XP_002665106.2 PREDICTED: nucleotide-binding oligomerization domain-containing protein 1-like D. rerio 53.6 926
Other hits (2 of 20) [Show all]SpeciesId(%)Len(aa)
XP_003896196.1 PREDICTED: nucleotide-binding oligomerization domain-containing protein 1 P. anubis 97.3 952
XP_001085719.1 PREDICTED: nucleotide-binding oligomerization domain-containing protein 1-like M. mulatta 97.1 952

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: lung; brain; mixed; uncharacterized tissue; connective tissue; eye; lymph node; testis; uterus; intestine; ovary; pancreas; muscle; embryonic tissue; cervix; mouth; placenta; kidney; lymph; thymus; blood; liver; skin; larynx; prostate; ascites; spleen; thyroid; nerve; ganglia; bone; vascular; adipose tissue
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 7
Map position: 7p15-p14
UniSTS entry: Chr 7 STS-R02588 [Map Viewer]
UniSTS entry: Chr 7 NOD1
UniSTS entry: Chr 7 CARD4_3524
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (11)

AY128686.1 Homo sapiens CARD4 isoform mRNA, partial cds, alternatively spliced
AY128685.1 Homo sapiens CARD4 isoform mRNA, partial cds, alternatively spliced
AY128684.1 Homo sapiens CARD4 isoform mRNA, partial cds, alternatively spliced
AY128683.1 Homo sapiens CARD4 isoform mRNA, partial cds, alternatively spliced
AY128682.1 Homo sapiens CARD4 isoform mRNA, partial cds, alternatively spliced
NM_006092.2 Homo sapiens nucleotide-binding oligomerization domain containing 1 (NOD1), mRNA PA
AY187249.1 Homo sapiens CARD4 isoform 1 (CARD4) mRNA, partial sequence; alternatively spliced P
AF126484.1 Homo sapiens CARD4 mRNA, complete cds P
AF113925.1 Homo sapiens Nod1 mRNA, complete cds P
AK300367.1 Homo sapiens cDNA FLJ60889 complete cds, highly similar to Caspase recruitment domain-containing protein 4 P
BC040339.1 Homo sapiens nucleotide-binding oligomerization domain containing 1, mRNA (cDNA clone MGC:17074 IMAGE:4338930), complete cds PA

EST sequences (10 of 138) [Show all sequences]

AA975909.1 Clone IMAGE:1567978 lung 3' read A
AI141321.1 Clone IMAGE:1669374 brain 3' read A
CB045578.1 Clone IMAGE:3218314 intestine 3' read A
CB045579.1 Clone IMAGE:3218314 intestine 5' read P
BX116589.1 Clone IMAGp998H03120_;_IMAGE:124082 mixed
AI217878.1 Clone IMAGE:1755864 testis 3' read A
AI264354.1 Clone IMAGE:1856010 mixed 3' read A
CB163924.1 Clone L17N670205n1-52-E06 liver 5' read A
AI246675.1 Clone IMAGE:1857705 mixed 3' read A
AI359321.1 Clone IMAGE:2013448 brain 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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