NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy
 Search
NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
Finding cDNAs

UGID:218286     UniGene Hs.403934     Homo sapiens (human)   LHX8
LIM homeobox 8 (LHX8)

Human protein-coding gene LHX8. Represented by 16 ESTs from 11 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 218286 - Hs.403934]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_524738.2 PREDICTED: LIM/homeobox protein Lhx8 isoform 2 P. troglodytes 100.0 355
NP_001001933.1 LHX8 gene product H. sapiens 100.0 355
XP_001097664.2 PREDICTED: LIM/homeobox protein Lhx8-like M. mulatta 99.7 355
XP_003892128.1 PREDICTED: LIM/homeobox protein Lhx8 isoform 1 P. anubis 99.7 355
XP_002715959.1 PREDICTED: LIM homeobox 8 O. cuniculus 99.7 326
NP_034843.2 Lhx8 gene product M. musculus 97.7 344
NP_001079958.1 LIM homeobox 8 X. laevis 88.6 228
NP_001003980.1 lhx8a gene product D. rerio 80.2 323
NP_523907.2 arrowhead, isoform A D. melanogaster 50.0 200
Other hits (2 of 31) [Show all]SpeciesId(%)Len(aa)
XP_002686347.1 PREDICTED: LIM/homeobox protein Lhx8 B. taurus 99.1 345
XP_547330.3 PREDICTED: LIM/homeobox protein Lhx8 C. lupus familiaris 99.0 299

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: mixed; brain; skin; embryonic tissue; pancreas; connective tissue; testis
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 1
Map position: 1p31.1
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (4)

NM_001001933.1 Homo sapiens LIM homeobox 8 (LHX8), transcript variant 1, mRNA PA
BC036423.1 Homo sapiens cDNA clone IMAGE:4797854, containing frame-shift errors PA
NM_001256114.1 Homo sapiens LIM homeobox 8 (LHX8), transcript variant 2, mRNA PA
BC040321.1 Homo sapiens LIM homeobox 8, mRNA (cDNA clone MGC:43046 IMAGE:4839343), complete cds PA

EST sequences (10 of 16) [Show all sequences]

CR735202.1 Clone IMAGp958B211179_;_IMAGE:4308020 skin 5' read P
CR735617.1 Clone IMAGp958N111159_;_IMAGE:4300618 pancreas 5' read P
DN831209.1 Clone MGC1.1.1.1.1.E05 mixed
DN831210.1 Clone MGC1.1.1.1.1.E05 mixed P
DR002427.1 Clone TC103728 brain 5' read P
DR007906.1 Clone MGC5.2.1.1.1.A08 mixed P
BF572867.1 Clone IMAGE:4254128 skin 5' read P
DB358728.1 Clone HEMBA1007349 embryonic tissue 3' read
DB319894.1 Clone HSYRA2001255 connective tissue 3' read
BF978460.1 Clone IMAGE:4307609 skin 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help