> Collagen, type XI, alpha 2 (COL11A2)
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UGID:208239     UniGene Hs.390171     Homo sapiens (human)   COL11A2 Links
Collagen, type XI, alpha 2 (COL11A2)

Human protein-coding gene COL11A2. Represented by 100 ESTs from 37 cDNA libraries. Corresponds to 4 reference sequences (different isoforms). [UniGene 208239 - Hs.390171]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_542411.2 COL11A2 gene product H. sapiens 100.0 1735
NP_034056.1 Col11a2 gene product M. musculus 94.7 1649
NP_001073461.1 col11a2 gene product D. rerio 77.1 1670
NP_001138062.1 CG42342, isoform C D. melanogaster 50.5 210
NP_001081260.1 collagen, type II, alpha 1 precursor X. laevis 46.4 1212
NP_001255858.1 Protein COL-135, isoform b C. elegans 45.1 504
Other hits (2 of 42) [Show all]SpeciesId(%)Len(aa)
XP_003897481.1 PREDICTED: collagen alpha-2(XI) chain-like isoform 2 P. anubis 98.9 1735
XP_003128379.1 PREDICTED: collagen alpha-2(XI) chain-like isoform 1 S. scrofa 97.4 1736

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: connective tissue; mixed; embryonic tissue; bone; brain; ovary; ear; pituitary gland; eye; uncharacterized tissue; uterus; skin; adrenal gland; intestine; pharynx; testis; heart
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 6
Map position: 6p21.3
UniSTS entry: Chr 6 RH46226 [Map Viewer]
UniSTS entry: Chr 6 SHGC-35646 [Map Viewer]
UniSTS entry: Chr 6 SHGC-56505
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (8)

BC053886.1 Homo sapiens collagen, type XI, alpha 2, mRNA (cDNA clone IMAGE:6051150), complete cds PA
AK130938.1 Homo sapiens cDNA FLJ27428 fis, clone WMD05691, highly similar to Collagen alpha 2(XI) chain precursor P
NM_080681.2 Homo sapiens collagen, type XI, alpha 2 (COL11A2), transcript variant 2, mRNA P
NM_080680.2 Homo sapiens collagen, type XI, alpha 2 (COL11A2), transcript variant 1, mRNA P
NM_080679.2 Homo sapiens collagen, type XI, alpha 2 (COL11A2), transcript variant 3, mRNA P
J04974.1 Human alpha-2 type XI collagen mRNA (COL11A2) P
L18987.1 Human alpha-2 type XI collagen mRNA, partial cds P
NM_001163771.1 Homo sapiens collagen, type XI, alpha 2 (COL11A2), transcript variant 4, mRNA PA

EST sequences (10 of 100) [Show all sequences]

AI038760.1 Clone IMAGE:1658643 embryonic tissue 3' read
AI056670.1 Clone IMAGE:1676492 embryonic tissue 3' read A
AI123016.1 Clone IMAGE:1509901 mixed 3' read
AI123641.1 Clone IMAGE:1566324 mixed 3' read
CB044233.1 Clone IMAGE:3217546 intestine 3' read A
CB044234.1 Clone IMAGE:3217546 intestine 5' read P
AI167147.1 Clone IMAGE:1565551 mixed 3' read
R41059.1 Clone k511-f heart
AI377015.1 Clone IMAGE:2065952 embryonic tissue 3' read
AI381193.1 Clone IMAGE:2067831 embryonic tissue 3' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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