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ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c (ATP6V0C)
Human protein-coding gene ATP6V0C. Represented by 938 ESTs from 303 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 207642 - Hs.389107]
SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
| Best Hits and Hits from model organisms | Species | Id(%) | Len(aa) |
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PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit isoform 2 |
P. troglodytes |
100.0 |
154 |
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ATP6V0C gene product |
H. sapiens |
100.0 |
154 |
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ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c |
X. laevis |
96.1 |
153 |
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V-type proton ATPase 16 kDa proteolipid subunit |
M. musculus |
95.5 |
154 |
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atp6v0cb gene product |
D. rerio |
95.4 |
151 |
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vacuolar H[+] ATPase subunit 16-3, isoform A |
D. melanogaster |
84.6 |
155 |
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Vma3p |
S. cerevisiae |
78.1 |
155 |
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vacuolar ATP synthase 16 kDa proteolipid subunit |
N. crassa |
78.1 |
155 |
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Protein VHA-3 |
C. elegans |
71.5 |
157 |
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vacuolar H(+)-ATPase V0 sector, c/c' subunits |
C. reinhardtii |
68.7 |
165 |
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ATPase, F0/V0 complex, subunit C protein |
A. thaliana |
64.6 |
164 |
| Other hits (2 of 63) [Show all] | Species | Id(%) | Len(aa) |
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PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit isoform 1 |
P. anubis |
98.7 |
154 |
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PREDICTED: v-type proton ATPase 16 kDa proteolipid subunit-like |
E. caballus |
98.7 |
154 |
GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
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EST Profile: | Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this] |
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GEO Profiles: |
Experimental gene expression data (Gene Expression Omnibus). |
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cDNA Sources: |
brain; skin; pancreas; eye; lung; mixed; uncharacterized tissue; prostate; stomach; placenta; intestine; ovary; uterus; mammary gland; embryonic tissue; blood; kidney; testis; lymph node; ascites; bladder; tonsil; ganglia; bone; connective tissue; muscle; liver; pineal gland; mouth; nerve; adrenal gland; lymph; heart; esophagus; cervix; bone marrow; pituitary gland; salivary gland; ear; spleen; umbilical cord; pharynx; vascular; parathyroid; epididymis |
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.
mRNA sequences (10)
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BT007155.1 |
Homo sapiens ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c mRNA, complete cds |
P |
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NM_001694.3 |
Homo sapiens ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c (ATP6V0C), transcript variant 1, mRNA |
PA |
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CR541951.1 |
Homo sapiens full open reading frame cDNA clone RZPDo834E0134D for gene ATP6V0C, ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c; complete cds, without stopcodon |
P |
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CR541930.1 |
Homo sapiens full open reading frame cDNA clone RZPDo834B0334D for gene ATP6V0C, ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c; complete cds, incl. stopcodon |
P |
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M62762.1 |
Human vacuolar H+ ATPase proton channel subunit mRNA, complete cds |
P |
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BC004537.2 |
Homo sapiens ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c, mRNA (cDNA clone MGC:3723 IMAGE:3618755), complete cds |
PA |
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BC007759.2 |
Homo sapiens ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c, mRNA (cDNA clone MGC:12873 IMAGE:4127653), complete cds |
PA |
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BC007389.2 |
Homo sapiens ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c, mRNA (cDNA clone MGC:16271 IMAGE:3831016), complete cds |
PA |
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BC009290.2 |
Homo sapiens ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c, mRNA (cDNA clone MGC:16615 IMAGE:4111426), complete cds |
PA |
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NM_001198569.1 |
Homo sapiens ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c (ATP6V0C), transcript variant 2, mRNA |
PA |
EST sequences (10 of 938) [Show all sequences]
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AA961353.1 |
Clone IMAGE:1599486 |
uncharacterized tissue |
3' read |
A |
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AA906252.1 |
Clone IMAGE:1505909 |
mixed |
3' read |
A |
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AA907733.1 |
Clone IMAGE:1505909 |
mixed |
3' read |
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AA969479.1 |
Clone IMAGE:1572622 |
kidney |
3' read |
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AA973141.1 |
Clone IMAGE:1564211 |
mixed |
3' read |
A |
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AA988367.1 |
Clone IMAGE:1605571 |
kidney |
3' read |
A |
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AA993430.1 |
Clone IMAGE:1624631 |
embryonic tissue |
3' read |
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AA994258.1 |
Clone IMAGE:1625377 |
mixed |
3' read |
A |
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AA996121.1 |
Clone IMAGE:1635909 |
kidney |
3' read |
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AA999815.1 |
Clone IMAGE:1607987 |
mammary gland |
3' read |
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Key to Symbols
P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria
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