> Cerebral cavernous malformation 2-like (CCM2L)
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UGID:204541     UniGene Hs.382151     Homo sapiens (human)   CCM2L Order cDNA clone, Links
Cerebral cavernous malformation 2-like (CCM2L)

Human protein-coding gene CCM2L. Represented by 48 ESTs from 32 cDNA libraries. EST representation biased toward adult. Corresponds to reference sequence NM_080625.3. [UniGene 204541 - Hs.382151]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_542192.2 CCM2L gene product H. sapiens 100.0 432
NP_663511.2 Ccm2l gene product M. musculus 90.4 480
XP_697096.4 PREDICTED: uncharacterized protein C20orf160 D. rerio 63.9 604
Other hits (2 of 16) [Show all]SpeciesId(%)Len(aa)
XP_003904942.1 PREDICTED: uncharacterized protein C20orf160 homolog P. anubis 98.4 430
XP_001108921.2 PREDICTED: uncharacterized protein C20orf160-like isoform 1 M. mulatta 98.2 442

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
Restricted Expression: adult [show more like this]
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: intestine; testis; spleen; uncharacterized tissue; brain; placenta; pancreas; stomach; lung; uterus; adrenal gland; mixed; heart; nerve; connective tissue; kidney; adipose tissue
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 20
Map position: 20q11.2
UniSTS entry: Chr 20 RH36037 [Map Viewer]
UniSTS entry: Chr 20 RH80084
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (5)

AK125588.1 Homo sapiens cDNA FLJ43600 fis, clone SPLEN2002147, weakly similar to Halocynthia roretzi mRNA for HrPET-3 P
AK057090.1 Homo sapiens cDNA FLJ32528 fis, clone SMINT2000145, weakly similar to Halocynthia roretzi mRNA for HrPET-3 P
NM_080625.3 Homo sapiens cerebral cavernous malformation 2-like (CCM2L), mRNA PA
BC030254.1 Homo sapiens chromosome 20 open reading frame 160, mRNA (cDNA clone MGC:40114 IMAGE:5182496), complete cds PA
BC032455.1 Homo sapiens chromosome 20 open reading frame 160, mRNA (cDNA clone IMAGE:5174270), complete cds PA

EST sequences (10 of 48) [Show all sequences]

AA962450.1 Clone IMAGE:1553580 kidney 3' read A
CA976142.1 Clone IMAGE:6202559 nerve 5' read
AI143231.1 Clone IMAGE:1706052 heart 3' read A
R39162.1 Clone IMAGE:22994 brain 3' read A
BX283414.1 Clone IMAGp958F21781_;_IMAGE:3936788 lung
AI829162.1 Clone IMAGE:2421296 pancreas 3' read A
F12881.1 Clone c-3fg09 brain P
F10484.1 Clone c-3fg09 brain 3' read A
T15601.1 brain 3' read A
BP251306.1 Clone HPR07114 brain 5' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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