> NOP56 ribonucleoprotein (NOP56)
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UGID:201373     UniGene Hs.376064     Homo sapiens (human)   NOP56 Order cDNA clone, Links
NOP56 ribonucleoprotein (NOP56)

Human protein-coding gene NOP56. Represented by 2021 ESTs from 475 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 201373 - Hs.376064]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_006383.2 NOP56 gene product H. sapiens 100.0 593
XP_003905026.1 PREDICTED: nucleolar protein 56 P. anubis 99.8 593
NP_001231603.1 NOP56 gene product P. troglodytes 99.8 593
XP_001110561.2 PREDICTED: nucleolar protein 56-like M. mulatta 99.8 427
NP_077155.2 nucleolar protein 56 M. musculus 97.8 579
NP_957511.1 nop56 gene product D. rerio 87.0 493
NP_001082151.1 XNop56 protein X. laevis 86.8 531
NP_651040.3 Nop56 D. melanogaster 74.3 495
XP_001697006.1 nucleolar protein, component of C/D snoRNPs C. reinhardtii 74.0 496
NP_505660.1 Protein K07C5.4 C. elegans 70.3 481
NP_176007.1 homolog of nucleolar protein NOP56 A. thaliana 69.3 521
NP_013298.1 Nop56p S. cerevisiae 65.6 500
XP_958049.2 protein SIK1 N. crassa 62.4 515
Other hits (2 of 60) [Show all]SpeciesId(%)Len(aa)
XP_001497231.3 PREDICTED: nucleolar protein 56 E. caballus 99.0 597
XP_851724.2 PREDICTED: nucleolar protein 56 C. lupus familiaris 98.5 595

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; kidney; lung; testis; uncharacterized tissue; esophagus; skin; intestine; uterus; mammary gland; embryonic tissue; liver; placenta; thymus; ascites; ovary; eye; mixed; stomach; spleen; connective tissue; thyroid; pancreas; blood; cervix; heart; prostate; pharynx; mouth; bone marrow; vascular; bladder; lymph; bone; lymph node; trachea; adrenal gland; salivary gland; muscle; larynx; adipose tissue; tonsil; pituitary gland; umbilical cord; ganglia
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 20
Map position: 20p13
UniSTS entry: Chr 20 G54023
UniSTS entry: Chr 20 WI-18557 [Map Viewer]
UniSTS entry: Chr 20 D20S559E
UniSTS entry: Chr 12 G07287
UniSTS entry: Chr 20 MARC_6809-6810:992007497:1
UniSTS entry: Chr 1 D15S1477
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (13)

BX647513.1 Homo sapiens mRNA; cDNA DKFZp686L04199 (from clone DKFZp686L04199) PA
BX647439.1 Homo sapiens mRNA; cDNA DKFZp686B1699 (from clone DKFZp686B1699) PA
BX641071.1 Homo sapiens mRNA; cDNA DKFZp686H24193 (from clone DKFZp686H24193) PA
NM_006392.3 Homo sapiens NOP56 ribonucleoprotein (NOP56), transcript variant 1, mRNA PA
AK021907.1 Homo sapiens cDNA FLJ11845 fis, clone HEMBA1006674
BC104793.1 Homo sapiens NOP56 ribonucleoprotein homolog (yeast), mRNA (cDNA clone MGC:132453 IMAGE:8143796), complete cds P
BC104791.1 Homo sapiens NOP56 ribonucleoprotein homolog (yeast), mRNA (cDNA clone MGC:132451 IMAGE:8143794), complete cds P
BC004937.1 Homo sapiens NOP56 ribonucleoprotein homolog (yeast), mRNA (cDNA clone IMAGE:3608097), complete cds PA
AK292721.1 Homo sapiens cDNA FLJ76962 complete cds, highly similar to Homo sapiens nucleolar protein 5A (56kDa with KKE/D repeat) (NOL5A), mRNA PA
BC018421.1 Homo sapiens NOP56 ribonucleoprotein homolog (yeast), mRNA (cDNA clone IMAGE:4448930), partial cds PA
BC035369.1 Homo sapiens NOP56 ribonucleoprotein homolog (yeast), mRNA (cDNA clone IMAGE:5177114) PA
NR_027700.2 Homo sapiens NOP56 ribonucleoprotein (NOP56), transcript variant 2, non-coding RNA PA
Y12065.1 Homo sapiens mRNA for nucleolar protein hNop56 P

EST sequences (10 of 2021) [Show all sequences]

AA961689.1 Clone IMAGE:1598291 uncharacterized tissue 3' read PA
AA976748.1 Clone IMAGE:1585809 uncharacterized tissue 3' read A
AA989699.1 Clone IMAGE:1577613 spleen 3' read A
AA994727.1 Clone IMAGE:1626660 mixed 3' read PA
AI014767.1 Clone IMAGE:1611174 uncharacterized tissue 3' read A
AI015644.1 Clone IMAGE:1635546 kidney 3' read P
AI033038.1 Clone IMAGE:1654376 mixed 3' read A
AI142063.1 Clone IMAGE:1567239 mixed 3' read PA
CB052380.1 Clone IMAGE:3290264 uncharacterized tissue 5' read P
CB054898.1 Clone IMAGE:3291865 brain 3' read PA


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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