> Spectrin, alpha, non-erythrocytic 1 (SPTAN1)
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UGID:199810     UniGene Hs.372331     Homo sapiens (human)   SPTAN1 Order cDNA clone, Links
Spectrin, alpha, non-erythrocytic 1 (SPTAN1)

Human protein-coding gene SPTAN1. Represented by 1085 ESTs from 456 cDNA libraries. Corresponds to 3 reference sequences (different isoforms). [UniGene 199810 - Hs.372331]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001123910.1 SPTAN1 gene product H. sapiens 100.0 2476
XP_002800013.1 PREDICTED: spectrin alpha chain, brain-like isoform 3 M. mulatta 100.0 2476
XP_003911270.1 PREDICTED: spectrin alpha chain, brain isoform 2 P. anubis 100.0 2476
XP_003312345.1 PREDICTED: spectrin alpha chain, brain isoform 3 P. troglodytes 100.0 2476
XP_003364202.1 PREDICTED: spectrin alpha chain, brain E. caballus 99.6 2476
NP_001107628.1 spectrin alpha chain, brain B. taurus 99.6 2471
NP_001171138.1 Sptan1 gene product M. musculus 99.2 2476
NP_001091958.1 spna2 gene product D. rerio 93.2 2479
NP_476739.1 alpha spectrin, isoform A D. melanogaster 70.9 2414
NP_508537.1 SPeCtrin family member (spc-1) C. elegans 66.1 2425
Other hits (2 of 33) [Show all]SpeciesId(%)Len(aa)
XP_004007207.1 PREDICTED: spectrin alpha chain, non-erythrocytic 1 O. aries 99.4 2260
XP_003339666.1 PREDICTED: spectrin alpha chain, brain M. domestica 99.2 2476

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; lung; mammary gland; eye; placenta; intestine; embryonic tissue; uncharacterized tissue; blood; connective tissue; liver; skin; prostate; thyroid; esophagus; mouth; testis; pharynx; uterus; muscle; larynx; stomach; ovary; pancreas; thymus; kidney; bone; heart; nerve; lymph; mixed; amniotic fluid; bladder; spleen; vascular; ganglia; cervix; lymph node; adrenal gland; trachea; ascites; salivary gland; adipose tissue; tonsil; bone marrow; pituitary gland; umbilical cord; ear; pineal gland; epididymis
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 9
Map position: 9q34.11
UniSTS entry: Chr 9 SHGC-8025
UniSTS entry: Chr 9 D9S183E
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (21)

BC051801.1 Homo sapiens spectrin, alpha, non-erythrocytic 1 (alpha-fodrin), mRNA (cDNA clone IMAGE:5211391), partial cds PA
BC053521.1 Homo sapiens spectrin, alpha, non-erythrocytic 1 (alpha-fodrin), mRNA (cDNA clone MGC:51928 IMAGE:5529391), complete cds PA
AL110273.1 Homo sapiens mRNA; cDNA DKFZp564P0562 (from clone DKFZp564P0562) PA
NM_003127.3 Homo sapiens spectrin, alpha, non-erythrocytic 1 (SPTAN1), transcript variant 2, mRNA PA
J05243.1 Human nonerythroid alpha-spectrin (SPTAN1) mRNA, complete cds P
AB191262.1 Homo sapiens SPTAN1 mRNA for non-erythrocytic spectrin alpha, complete cds P
AB209860.1 Homo sapiens mRNA for spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) variant protein P
AK310696.1 Homo sapiens cDNA, FLJ17738
AK307676.1 Homo sapiens cDNA, FLJ97624 P
AK309836.1 Homo sapiens cDNA, FLJ99877 P
AK300386.1 Homo sapiens cDNA FLJ61399 complete cds, highly similar to Spectrin alpha chain, brain P
AK294753.1 Homo sapiens cDNA FLJ59116 complete cds, highly similar to Spectrin alpha chain, brain P
NM_001130438.2 Homo sapiens spectrin, alpha, non-erythrocytic 1 (SPTAN1), transcript variant 1, mRNA PA
U26396.1 Human fetal alpha II spectrin mRNA, partial cds P
X86901.1 H.sapiens mRNA for alpha-spectrin P
M19725.1 Human nonerythroid alpha-spectrin mRNA, 3' end P
M24773.1 Human alpha-fodrin mRNA, partial cds P
M18627.1 Human alpha-fodrin gene, partial cds P
BC034956.1 Homo sapiens cDNA clone IMAGE:4821017, containing frame-shift errors PA
NM_001195532.1 Homo sapiens spectrin, alpha, non-erythrocytic 1 (SPTAN1), transcript variant 3, mRNA P
U83867.1 Human alpha II spectrin mRNA, complete cds P

EST sequences (10 of 1085) [Show all sequences]

R14737.1 Clone IMAGE:29624 brain 5' read
AA984648.1 Clone IMAGE:1630050 brain 3' read P
R19014.1 Clone IMAGE:33411 brain 5' read
R19128.1 Clone IMAGE:33006 brain 5' read
AI079706.1 Clone IMAGE:1669722 brain 3' read A
AI088647.1 Clone IMAGE:1696293 uterus 3' read PA
R23239.1 Clone IMAGE:131074 placenta 3' read A
R23314.1 Clone IMAGE:131074 placenta 5' read
BX111658.1 Clone IMAGp998O23147_;_IMAGE:29624 brain A
AI204997.1 Clone IMAGE:1684520 brain 3' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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