Chromosome 1 open reading frame 27 (C1orf27)

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UGID:199135 UniGene Hs.371210 Homo sapiens (human) C1orf27

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Chromosome 1 open reading frame 27 (C1orf27)

Human protein-coding gene C1orf27. Represented by 214 ESTs from 135 cDNA libraries. Corresponds to 3 reference sequences (different isoforms). [UniGene 199135 - Hs.371210]

SELECTED PROTEIN SIMILARITIES

Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.

Best Hits and Hits from model organisms		Species	Id(%)	Len(aa)
XP_001165643.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: protein odr-4 homolog isoform 3	P. troglodytes	100.0	453
NP_060317.3 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	C1orf27 gene product	H. sapiens	100.0	453
NP_663486.2 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	BC003331 gene product	M. musculus	88.6	446
NP_001090192.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	protein odr-4 homolog	X. laevis	55.2	444
NP_956910.3 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	protein odr-4 homolog	D. rerio	52.1	452
Other hits (2 of 17) [Show all]		Species	Id(%)	Len(aa)
XP_001113251.2 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: protein odr-4 homolog isoform 1	M. mulatta	98.0	453
XP_003893437.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: protein odr-4 homolog	P. anubis	98.0	453

GENE EXPRESSION

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.

	EST Profile:	Approximate expression patterns inferred from EST sources. [Show more entries with profiles like this]
	GEO Profiles:	Experimental gene expression data (Gene Expression Omnibus).
	cDNA Sources:	brain; liver; testis; embryonic tissue; ovary; vascular; lung; placenta; bone; mammary gland; kidney; mixed; spinal cord; stomach; uncharacterized tissue; pancreas; uterus; intestine; bone marrow; pharynx; eye; muscle; bladder; spleen; mouth; skin; heart; lymph node; adrenal gland; thymus; connective tissue; trachea; parathyroid; prostate; ascites; cervix; blood

MAPPING POSITION

Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.

Chromosome:	1
Map position:	1q25
UniSTS entry:	Chr 1	WI-22547	[Map Viewer]
UniSTS entry:	Chr 1	RH67877
UniSTS entry:	Chr 1	RH46918	[Map Viewer]

SEQUENCES

Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (11)

AK000171.1	Homo sapiens cDNA FLJ20164 fis, clone COL09448	PA
AY854248.1	Homo sapiens odorant response abnormal 4 protein mRNA, complete cds	PA
NM_017847.5	Homo sapiens chromosome 1 open reading frame 27 (C1orf27), transcript variant 1, mRNA	PA
AK026086.1	Homo sapiens cDNA: FLJ22433 fis, clone HRC09172	PA
DQ323046.1	Homo sapiens TTG1 mRNA, complete cds	P
BC003397.1	Homo sapiens chromosome 1 open reading frame 27, mRNA (cDNA clone MGC:4960 IMAGE:3448518), complete cds	PA
DQ529299.1	Homo sapiens TTG1A mRNA, complete cds	P
AF214011.1	Homo sapiens putative LAG1-interacting protein mRNA, partial cds	P
AK298107.1	Homo sapiens cDNA FLJ54926 complete cds	P
NM_001164246.1	Homo sapiens chromosome 1 open reading frame 27 (C1orf27), transcript variant 3, mRNA	PA
NM_001164245.1	Homo sapiens chromosome 1 open reading frame 27 (C1orf27), transcript variant 2, mRNA	PA

EST sequences (10 of 214) [Show all sequences]

CB051718.1	Clone IMAGE:3289857	uncharacterized tissue	5' read
CB053423.1	Clone IMAGE:3290867	uncharacterized tissue	5' read
AI167817.1	Clone IMAGE:1682618	parathyroid	3' read
AI183937.1	Clone IMAGE:1734709	testis	3' read
AI223263.1	Clone IMAGE:1838413	testis	3' read	A
AI271960.1	Clone IMAGE:1865550	kidney	3' read
CB122192.1	Clone L10ChoCK0-15-B07	liver	5' read
AI378314.1	Clone IMAGE:2068213	mixed	3' read	A
AI393491.1	Clone IMAGE:2111771	mixed	3' read	A
AI434437.1	Clone IMAGE:2130452	kidney	3' read	A

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria