> SP100 nuclear antigen (SP100)
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UGID:197868     UniGene Hs.369056     Homo sapiens (human)   SP100 Order cDNA clone, Links
SP100 nuclear antigen (SP100)

Human protein-coding gene SP100. Represented by 428 ESTs from 228 cDNA libraries. Corresponds to 6 reference sequences (different isoforms). [UniGene 197868 - Hs.369056]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001073860.1 SP100 gene product H. sapiens 100.0 884
XP_526052.2 PREDICTED: nuclear autoantigen Sp-100 isoform 14 P. troglodytes 99.5 884
NP_001080836.1 high mobility group box 1 X. laevis 74.4 210
NP_001092721.2 high-mobility group box 1b D. rerio 73.0 195
XP_001473574.2 PREDICTED: nuclear body protein SP140-like protein-like M. musculus 53.5 297
Other hits (2 of 28) [Show all]SpeciesId(%)Len(aa)
XP_003908100.1 PREDICTED: nuclear body protein SP140-like P. anubis 89.3 355
XP_001112681.2 PREDICTED: nuclear autoantigen Sp-100 isoform 9 M. mulatta 86.4 837

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: mixed; lung; kidney; mammary gland; skin; placenta; uncharacterized tissue; uterus; intestine; brain; blood; adipose tissue; bone marrow; pituitary gland; stomach; pancreas; pharynx; esophagus; bladder; connective tissue; spleen; heart; cervix; eye; trachea; thyroid; ascites; lymph node; liver; testis; adrenal gland; prostate; vascular; embryonic tissue; thymus; bone; mouth; ovary; salivary gland
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 2
Map position: 2q37.1
UniSTS entry: Chr 2 D2S2641 [Map Viewer]
UniSTS entry: Chr 15 MARC_26602-26603:1033757772:1
UniSTS entry: Chr 15 Rnu2
UniSTS entry: Chr 2 D2S2624 [Map Viewer]
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (17)

AF056322.1 Homo sapiens SP100-HMG nuclear autoantigen (SP100) mRNA, complete cds PA
NM_003113.3 Homo sapiens SP100 nuclear antigen (SP100), transcript variant 2, mRNA PA
CR749288.1 Homo sapiens mRNA; cDNA DKFZp686E07254 (from clone DKFZp686E07254) PA
U36501.1 Human SP100-B (SP100-B) mRNA, complete cds P
AF255565.1 Homo sapiens nuclear body protein SP100C mRNA, complete cds, alternatively spliced P
NM_001080391.1 Homo sapiens SP100 nuclear antigen (SP100), transcript variant 1, mRNA P
BC011562.1 Homo sapiens SP100 nuclear antigen, mRNA (cDNA clone MGC:20140 IMAGE:4560914), complete cds PA
L79987.1 Homo sapiens nuclear autoantigen mRNA, partial cds; alternatively spliced P
L79988.1 Homo sapiens nuclear autoantigen mRNA, partial cds; alternatively spliced P
AK091898.1 Homo sapiens cDNA FLJ34579 fis, clone KIDNE2008446, highly similar to NUCLEAR AUTOANTIGEN SP-100 P
AK293373.1 Homo sapiens cDNA FLJ59578 complete cds, highly similar to Nuclear autoantigen Sp-100 PA
AK304205.1 Homo sapiens cDNA FLJ61544 complete cds, highly similar to Nuclear autoantigen Sp-100 P
NM_001206704.1 Homo sapiens SP100 nuclear antigen (SP100), transcript variant 6, mRNA PA
NM_001206703.1 Homo sapiens SP100 nuclear antigen (SP100), transcript variant 5, mRNA PA
NM_001206702.1 Homo sapiens SP100 nuclear antigen (SP100), transcript variant 4, mRNA PA
NM_001206701.1 Homo sapiens SP100 nuclear antigen (SP100), transcript variant 3, mRNA P
M60618.1 Human nuclear autoantigen (SP-100) mRNA, complete cds P

EST sequences (10 of 428) [Show all sequences]

AA836847.1 Clone IMAGE:1422685 kidney P
AA993907.1 Clone IMAGE:1628073 mixed 3' read A
AI018222.1 Clone IMAGE:1626446 mixed 3' read A
AA921773.1 Clone IMAGE:1543839 mixed 3' read
AI032077.1 Clone IMAGE:1654251 mixed 3' read A
AI040538.1 Clone IMAGE:1657169 mixed 3' read A
CB046446.1 Clone IMAGE:3252591 kidney 3' read PA
CB046447.1 Clone IMAGE:3252591 kidney 5' read PA
CB047248.1 Clone IMAGE:3253368 kidney 5' read
AI147121.1 Clone IMAGE:1509698 mixed 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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