> Family with sequence similarity 21, member C (FAM21C)
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UGID:196939     UniGene Hs.365286     Homo sapiens (human)   FAM21C Order cDNA clone, Links
Family with sequence similarity 21, member C (FAM21C)

Human protein-coding gene FAM21C. Represented by 308 ESTs from 175 cDNA libraries. Corresponds to 3 reference sequences (different isoforms). [UniGene 196939 - Hs.365286]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_056077.2 FAM21C gene product H. sapiens 100.0 1319
NP_001079374.1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 X. laevis 88.7 124
NP_080861.2 Fam21 gene product M. musculus 80.4 1333
XP_003199764.1 PREDICTED: WASH complex subunit FAM21 D. rerio 57.4 1088
Other hits (2 of 26) [Show all]SpeciesId(%)Len(aa)
XP_001140122.2 PREDICTED: WASH complex subunit FAM21A-like P. troglodytes 98.2 1310
XP_003903655.1 PREDICTED: WASH complex subunit FAM21A-like, partial P. anubis 96.9 711

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; eye; lung; mammary gland; cervix; uterus; testis; embryonic tissue; prostate; thyroid; lymph node; skin; heart; ovary; blood; uncharacterized tissue; mixed; intestine; thymus; pancreas; kidney; placenta; liver; connective tissue; tonsil; trachea; parathyroid; ascites; muscle; lymph; pituitary gland; salivary gland; bone; mouth; bone marrow
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 10
Map position: 10q11.1
UniSTS entry: Chr 10 SGC30331 [Map Viewer]
UniSTS entry: Chr 10 Cda0qf11
UniSTS entry: Chr 10 D10S1470 [Map Viewer]
UniSTS entry: Chr 10 WI-16150 [Map Viewer]
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (15)

AL050279.1 Homo sapiens mRNA; cDNA DKFZp566G1246 (from clone DKFZp566G1246) PA
BC053887.1 Homo sapiens family with sequence similarity 21, member C, mRNA (cDNA clone IMAGE:6043269) PA
AK126291.1 Homo sapiens cDNA FLJ44311 fis, clone TRACH2025753
AK001545.1 Homo sapiens cDNA FLJ10683 fis, clone NT2RP3000142, highly similar to Protein FAM21C P
NM_015262.2 Homo sapiens family with sequence similarity 21, member C (FAM21C), transcript variant 1, mRNA PA
BC006456.1 Homo sapiens family with sequence similarity 21, member C, mRNA (cDNA clone IMAGE:3536558), complete cds PA
AK291430.1 Homo sapiens cDNA FLJ77522 complete cds P
AK293929.1 Homo sapiens cDNA FLJ61221 complete cds, highly similar to Protein FAM21C P
AK298385.1 Homo sapiens cDNA FLJ55935 partial cds, highly similar to Protein FAM21C P
AK303048.1 Homo sapiens cDNA FLJ61504 complete cds, highly similar to Protein FAM21C PA
BC150611.1 Homo sapiens family with sequence similarity 21, member C, mRNA (cDNA clone MGC:183521 IMAGE:9056981), complete cds P
NM_001169107.1 Homo sapiens family with sequence similarity 21, member C (FAM21C), transcript variant 3, mRNA PA
NM_001169106.1 Homo sapiens family with sequence similarity 21, member C (FAM21C), transcript variant 2, mRNA PA
BC039561.1 Homo sapiens family with sequence similarity 21, member C, mRNA (cDNA clone IMAGE:5123514) P
AB011164.1 Homo sapiens mRNA for KIAA0592 protein, partial cds P

EST sequences (10 of 308) [Show all sequences]

AA970720.1 Clone IMAGE:1573087 kidney 3' read A
AI021909.1 Clone IMAGE:1654658 mixed 3' read A
AI023041.1 Clone IMAGE:1651673 skin 3' read A
AI127911.1 Clone IMAGE:1712685 uterus 3' read A
AI129282.1 Clone IMAGE:1712395 uterus 3' read A
CB051466.1 Clone IMAGE:3289539 prostate 3' read A
CB051467.1 Clone IMAGE:3289539 prostate 5' read A
AI148431.1 Clone IMAGE:1738213 testis 3' read A
AI174597.1 Clone IMAGE:1701775 kidney 3' read A
R25262.1 Clone IMAGE:36452 brain 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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