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UGID:130654     UniGene Hs.36     Homo sapiens (human)   LTA Order cDNA clone, Links
Lymphotoxin alpha (TNF superfamily, member 1) (LTA)
SELECTED PROTEIN SIMILARITIES
Comparison of sequences in UniGene with selected protein reference sequences. The alignments can suggest function of a gene.
Reference ProteinSpeciesId(%)Len(aa)
NP_001038975.1 lymphotoxin alpha precursor P. troglodytes 100.0 204
NP_001153212.1 lymphotoxin alpha precursor H. sapiens 100.0 204
NP_034865.1 lymphotoxin A precursor M. musculus 78.2 201

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
Restricted Expression: lymphoma [show more like this]
fetus [show more like this]
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: mixed; uncharacterized tissue; pharynx; lymph; spleen; thymus; tonsil; heart; lung
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 6
Map position: 6p21.3
UniSTS entry: Chr 6 RH17367
UniSTS entry: GDB:192948
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (16)

NM_000595.2 Homo sapiens lymphotoxin alpha (TNF superfamily, member 1) (LTA), transcript variant 2, mRNA P
CR542273.1 Homo sapiens full open reading frame cDNA clone RZPDo834H0626D for gene LTA, lymphotoxin alpha (TNF superfamily, member 1); complete cds, without stopcodon P
CR542253.1 Homo sapiens full open reading frame cDNA clone RZPDo834D0626D for gene LTA, lymphotoxin alpha (TNF superfamily, member 1); complete cds, incl. stopcodon P
CR603193.1 full-length cDNA clone CS0DL012YE07 of B cells (Ramos cell line) Cot 25-normalized of Homo sapiens (human) P
DQ123827.1 Homo sapiens lymphotoxin alpha transcript variant 8 (LTA) mRNA, partial cds, alternatively spliced
DQ123826.1 Homo sapiens lymphotoxin alpha transcript variant 7 (LTA) mRNA, partial cds, alternatively spliced P
DQ123825.2 Homo sapiens lymphotoxin alpha transcript variant 6 (LTA) mRNA, partial cds, alternatively spliced P
DQ123824.1 Homo sapiens lymphotoxin alpha transcript variant 5 (LTA) mRNA, partial cds, alternatively spliced P
DQ123823.1 Homo sapiens lymphotoxin alpha transcript variant 4 (LTA) mRNA, partial cds, alternatively spliced P
DQ123822.1 Homo sapiens lymphotoxin alpha transcript variant 3 (LTA) mRNA, complete cds, alternatively spliced
DQ123821.1 Homo sapiens lymphotoxin alpha transcript variant 2 (LTA) mRNA, partial cds, alternatively spliced P
D12614.1 Homo sapiens LT mRNA for lymphotoxin (TNF-beta), complete cds P
BC034729.1 Homo sapiens lymphotoxin alpha (TNF superfamily, member 1), mRNA (cDNA clone MGC:17018 IMAGE:4341621), complete cds PA
D00102.1 Homo sapiens mRNA for lymphotoxin, complete cds P
X01393.1 Human mRNA for lymphotoxin P
NM_001159740.1 Homo sapiens lymphotoxin alpha (TNF superfamily, member 1) (LTA), transcript variant 1, mRNA PA

EST sequences (10 of 25) [Show all sequences]

AI075301.1 Clone IMAGE:1672927 mixed 3' read P
AA910185.1 Clone IMAGE:1524491 mixed 3' read A
BX108399.1 Clone IMAGp998F17789_;_IMAGE:345232 heart A
AI239743.1 Clone IMAGE:1846402 mixed 3' read A
AI702790.1 Clone IMAGE:2340391 lung 3' read A
BX372450.2 Clone CS0DL012YE07 uncharacterized tissue 3' read P
BX370788.2 Clone CS0DL012YE07 uncharacterized tissue 5' read
CD697300.1 pharynx P
CD698103.1 pharynx P
CV024994.1 mixed 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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