> High mobility group nucleosome binding domain 1 (HMGN1)
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UGID:195411     UniGene Hs.356285     Homo sapiens (human)   HMGN1 Order cDNA clone, Links
High mobility group nucleosome binding domain 1 (HMGN1)

Human protein-coding gene HMGN1. Represented by 1247 ESTs from 380 cDNA libraries. Corresponds to reference sequence NM_004965.6. [UniGene 195411 - Hs.356285]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_001113912.1 PREDICTED: non-histone chromosomal protein HMG-14 M. mulatta 100.0 99
XP_514899.2 PREDICTED: uncharacterized protein LOC458552 P. troglodytes 100.0 99
NP_004956.5 HMGN1 gene product H. sapiens 100.0 99
Other hits (2 of 8) [Show all]SpeciesId(%)Len(aa)
XP_859756.2 PREDICTED: non-histone chromosomal protein HMG-14-like isoform 3 C. lupus familiaris 96.0 100
NP_001029944.1 HMGN1 gene product B. taurus 96.0 100

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; embryonic tissue; uterus; placenta; testis; uncharacterized tissue; mixed; lung; eye; liver; heart; pancreas; prostate; stomach; larynx; blood; intestine; mammary gland; ovary; thymus; kidney; skin; bladder; tonsil; salivary gland; connective tissue; spleen; pineal gland; trachea; adrenal gland; ear; cervix; ascites; bone; muscle; parathyroid; bone marrow; lymph node; mouth; lymph; pharynx; vascular; pituitary gland; nerve; adipose tissue; ganglia; thyroid; esophagus; umbilical cord
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 21
Map position: 21q22.2
UniSTS entry: Chr 15 RH67009
UniSTS entry: Chr 15 G34952
UniSTS entry: Chr 15 RH80697
UniSTS entry: Chr 15 REN20199
UniSTS entry: Chr 2 ECD18713
UniSTS entry: Chr 2 ECD17402
UniSTS entry: Chr 21 REN20200
UniSTS entry: Chr 11 ECD10572
UniSTS entry: Chr 21 REN20212
UniSTS entry: Chr 21 REN20220
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (14)

BT007337.1 Homo sapiens high-mobility group nucleosome binding domain 1 mRNA, complete cds P
AK130775.1 Homo sapiens cDNA FLJ27265 fis, clone TMS00186
NM_004965.6 Homo sapiens high mobility group nucleosome binding domain 1 (HMGN1), mRNA PA
BC070153.1 Homo sapiens high-mobility group nucleosome binding domain 1, mRNA (cDNA clone MGC:88133 IMAGE:6450636), complete cds PA
BC070154.1 Homo sapiens high-mobility group nucleosome binding domain 1, mRNA (cDNA clone MGC:88134 IMAGE:6495327), complete cds PA
BC071643.1 Homo sapiens high-mobility group nucleosome binding domain 1, mRNA (cDNA clone MGC:87800 IMAGE:5549431), complete cds PA
BC072672.1 Homo sapiens high-mobility group nucleosome binding domain 1, mRNA (cDNA clone MGC:87801 IMAGE:6166317), complete cds PA
J02621.1 Human non-histone chromosomal protein HMG-14 mRNA, complete cds P
BC106080.1 Homo sapiens high-mobility group nucleosome binding domain 1, mRNA (cDNA clone MGC:117425 IMAGE:3855939), complete cds PA
BC107741.1 Homo sapiens high-mobility group nucleosome binding domain 1, mRNA (cDNA clone MGC:104230 IMAGE:6495117), complete cds PA
BC000075.2 Homo sapiens high-mobility group nucleosome binding domain 1, mRNA (cDNA clone MGC:1997 IMAGE:3510312), complete cds PA
AK056033.1 Homo sapiens cDNA FLJ31471 fis, clone NT2NE2001435
AK315410.1 Homo sapiens cDNA, FLJ96459 P
BC023984.1 Homo sapiens high-mobility group nucleosome binding domain 1, mRNA (cDNA clone MGC:23740 IMAGE:4104558), complete cds PA

EST sequences (10 of 1247) [Show all sequences]

AA954749.1 Clone IMAGE:1560664 mixed 3' read
AA961869.1 Clone IMAGE:1598667 uncharacterized tissue 3' read
AA968788.1 Clone IMAGE:1593679 kidney 3' read
AA973169.1 Clone IMAGE:1597341 uncharacterized tissue 3' read A
AA974069.1 Clone IMAGE:1586189 uncharacterized tissue 3' read A
AA976103.1 Clone IMAGE:1558450 lung 3' read
AA983536.1 Clone IMAGE:1553708 kidney 3' read A
AA988704.1 Clone IMAGE:1594025 kidney 3' read A
AA988537.1 Clone IMAGE:1602534 lung 3' read A
AA996278.1 Clone IMAGE:1604106 lung 3' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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