> Chromosome 15 open reading frame 40 (C15orf40)
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UGID:194507     UniGene Hs.352541     Homo sapiens (human)   C15orf40 Order cDNA clone, Links
Chromosome 15 open reading frame 40 (C15orf40)

Human protein-coding gene C15orf40. Represented by 66 ESTs from 46 cDNA libraries. Corresponds to 7 reference sequences (different isoforms). [UniGene 194507 - Hs.352541]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001153585.1 C15orf40 gene product H. sapiens 100.0 166
XP_001148978.2 PREDICTED: UPF0235 protein C15orf40 homolog isoform 1 P. troglodytes 100.0 145
NP_080353.1 3110040N11Rik gene product M. musculus 85.7 125
NP_001089221.1 uncharacterized protein LOC734268 X. laevis 66.1 118
Other hits (2 of 13) [Show all]SpeciesId(%)Len(aa)
XP_001111768.1 PREDICTED: UPF0235 protein C15orf40-like isoform 1 M. mulatta 96.1 153
XP_003901372.1 PREDICTED: UPF0235 protein C15orf40 homolog P. anubis 96.1 153

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: mixed; brain; mammary gland; intestine; liver; lung; skin; pancreas; eye; embryonic tissue; lymph node; muscle; bone marrow; uncharacterized tissue; kidney; larynx; blood; pharynx; stomach; placenta; testis; adrenal gland
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 15
Map position: 15q25.2
UniSTS entry: Chr 15 RH41989 [Map Viewer]
UniSTS entry: Chr 15 STS-N36410 [Map Viewer]
UniSTS entry: Chr 1 D15S1477
UniSTS entry: Chr 1 D11S2560
UniSTS entry: Chr 1 G35510
UniSTS entry: SHGC-35303
UniSTS entry: Chr 15 MGC29937__7701
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (10)

BC019820.1 Homo sapiens chromosome 15 open reading frame 40, mRNA (cDNA clone MGC:29937 IMAGE:4449390), complete cds PA
AK311484.1 Homo sapiens cDNA, FLJ18526 P
AK312160.1 Homo sapiens cDNA, FLJ92446 PA
NM_144597.2 Homo sapiens chromosome 15 open reading frame 40 (C15orf40), transcript variant 1, mRNA PA
NM_001160116.1 Homo sapiens chromosome 15 open reading frame 40 (C15orf40), transcript variant 5, mRNA PA
NM_001160115.1 Homo sapiens chromosome 15 open reading frame 40 (C15orf40), transcript variant 4, mRNA P
NM_001160114.1 Homo sapiens chromosome 15 open reading frame 40 (C15orf40), transcript variant 3, mRNA PA
NM_001160113.1 Homo sapiens chromosome 15 open reading frame 40 (C15orf40), transcript variant 2, mRNA P
NR_027650.1 Homo sapiens chromosome 15 open reading frame 40 (C15orf40), transcript variant 7, non-coding RNA PA
NR_027649.1 Homo sapiens chromosome 15 open reading frame 40 (C15orf40), transcript variant 6, non-coding RNA P

EST sequences (10 of 66) [Show all sequences]

AA969175.1 Clone IMAGE:1580303 mixed 3' read
AA905778.1 Clone IMAGE:1504762 mixed 3' read A
CB053496.1 Clone IMAGE:3291053 uncharacterized tissue 3' read A
CB053497.1 Clone IMAGE:3291053 uncharacterized tissue 5' read A
BX092435.1 Clone IMAGp998F235262_;_IMAGE:2132374 lymph node A
AI239480.1 Clone IMAGE:1846814 mixed 3' read A
AI434650.1 Clone IMAGE:2132374 lymph node 3' read A
AI636422.1 Clone IMAGE:2294784 pancreas 3' read PA
F31423.1 Clone s4000115H03 muscle
F35609.1 Clone sH5-000003-0/B01 muscle


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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