> Ubiquitin family domain containing 1 (UBFD1)
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UGID:131401     UniGene Hs.3459     Homo sapiens (human)   UBFD1 Links
Ubiquitin family domain containing 1 (UBFD1)

Human protein-coding gene UBFD1. Represented by 517 ESTs from 207 cDNA libraries. Corresponds to reference sequence NM_019116.2. [UniGene 131401 - Hs.3459]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_001095111.1 PREDICTED: ubiquitin domain-containing protein UBFD1 isoform 3 M. mulatta 100.0 308
XP_003916724.1 PREDICTED: ubiquitin domain-containing protein UBFD1 P. anubis 100.0 308
NP_061989.2 UBFD1 gene product H. sapiens 100.0 308
XP_003315063.1 PREDICTED: uncharacterized protein LOC746639 isoform 2 P. troglodytes 99.7 299
NP_613055.2 ubiquitin domain-containing protein UBFD1 M. musculus 98.6 365
NP_001076299.1 ubfd1 gene product D. rerio 89.6 269
Other hits (2 of 28) [Show all]SpeciesId(%)Len(aa)
NP_001098971.1 UBFD1 gene product B. taurus 99.3 305
XP_861234.2 PREDICTED: ubiquitin domain-containing protein UBFD1 isoform 5 C. lupus familiaris 99.3 275

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; testis; embryonic tissue; mixed; uterus; mammary gland; blood; vascular; skin; larynx; pancreas; intestine; placenta; mouth; lung; eye; lymph node; uncharacterized tissue; heart; ovary; thymus; lymph; kidney; thyroid; liver; prostate; muscle; parathyroid; umbilical cord; spleen; bone; adrenal gland; ear; bladder; stomach; spinal cord; ascites; connective tissue; tonsil; trachea; nerve; adipose tissue
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 16
Map position: 16p12
UniSTS entry: Chr 16 RH68198 [Map Viewer]
UniSTS entry: Chr 16 UniSTS:142701
UniSTS entry: Chr 16 RH65168
UniSTS entry: Chr 16 G60210
UniSTS entry: Chr 16 UBPH__5180
UniSTS entry: Chr 1 D10S16
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (10)

AK124139.1 Homo sapiens cDNA FLJ42145 fis, clone TESTI4000228, highly similar to Mus musculus ubiquitin family domain containing 1 (Ubfd1), mRNA P
NM_019116.2 Homo sapiens ubiquitin family domain containing 1 (UBFD1), mRNA P
AK025656.1 Homo sapiens cDNA: FLJ22003 fis, clone HEP06764 A
BC007880.2 Homo sapiens cDNA clone IMAGE:3936697, partial cds A
BC001413.2 Homo sapiens cDNA clone IMAGE:3140866, partial cds A
BC011830.2 Homo sapiens cDNA clone IMAGE:3836998, partial cds A
AK096189.1 Homo sapiens cDNA FLJ38870 fis, clone MESAN2013284
AK093029.1 Homo sapiens cDNA FLJ35710 fis, clone SPLEN2020608
AK092696.1 Homo sapiens cDNA FLJ35377 fis, clone SKMUS2004908, highly similar to Homo sapiens ubiquitin family domain containing 1 (UBFD1), mRNA P
AJ001827.1 Homo sapiens EST from sel cDNA 5D10, maps to Los Alamos contig C284, chromosome 16p12.2

EST sequences (10 of 517) [Show all sequences]

AA962441.1 Clone IMAGE:1553551 kidney 3' read A
AI023305.1 Clone IMAGE:1654563 mixed 3' read
AI027104.1 Clone IMAGE:1649765 parathyroid 3' read
AI038814.1 Clone IMAGE:1664170 skin 3' read
AI042557.1 Clone IMAGE:1665088 skin 3' read
AI092889.1 Clone IMAGE:1692791 heart 3' read
AI126112.1 Clone IMAGE:1735468 testis 3' read P
AI146710.1 Clone IMAGE:1697973 uterus 3' read A
CB054356.1 Clone IMAGE:3291506 brain 5' read
CB054355.1 Clone IMAGE:3291506 brain 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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