> Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F (SEMA3F)
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UGID:136144     UniGene Hs.32981     Homo sapiens (human)   SEMA3F Order cDNA clone, Links
Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F (SEMA3F)

Human protein-coding gene SEMA3F. Represented by 136 ESTs from 71 cDNA libraries. Corresponds to reference sequence NM_004186.3. [UniGene 136144 - Hs.32981]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_004177.3 SEMA3F gene product H. sapiens 100.0 784
XP_003309850.2 PREDICTED: LOW QUALITY PROTEIN: semaphorin-3F isoform 1 P. troglodytes 99.6 790
NP_035479.2 semaphorin-3F precursor M. musculus 98.1 753
NP_001014822.1 sema3fa gene product D. rerio 75.4 781
NP_001121263.1 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F precursor X. laevis 62.8 691
Other hits (2 of 19) [Show all]SpeciesId(%)Len(aa)
XP_001103281.1 PREDICTED: semaphorin-3F isoform 1 M. mulatta 99.4 784
XP_003894449.1 PREDICTED: semaphorin-3F isoform 1 P. anubis 99.4 784

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: kidney; prostate; mixed; brain; cervix; heart; eye; mouth; embryonic tissue; thyroid; uterus; lung; ovary; placenta; intestine; pancreas; mammary gland; uncharacterized tissue; bone; connective tissue; skin
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 3
Map position: 3p21.3
UniSTS entry: Chr 3 D3S4520
UniSTS entry: Chr 3 D3S4521
UniSTS entry: Chr 3 D3S4519
UniSTS entry: Chr 3 D3S4513
UniSTS entry: Chr 3 D3S4515
UniSTS entry: Chr 3 SGC31666 [Map Viewer]
UniSTS entry: Chr 3 D3S4516
UniSTS entry: Chr 3 D3S4512
UniSTS entry: Chr 3 D3S4511
UniSTS entry: Chr 3 SHGC-76759 [Map Viewer]
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (7)

BC042914.1 Homo sapiens sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F, mRNA (cDNA clone MGC:52231 IMAGE:5477898), complete cds PA
NM_004186.3 Homo sapiens sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F (SEMA3F), mRNA PA
U33920.1 Human clone lambda 5 semaphorin mRNA, complete cds P
AB209259.1 Homo sapiens mRNA for semaphorin 3F variant protein P
U38276.1 Human semaphorin III family homolog mRNA, complete cds PA
U32172.1 Human semaphorin IV mRNA, partial cds, clone contig H1.47
U32171.1 Human semaphorin IV mRNA, partial cds, clone contig H2.6

EST sequences (10 of 136) [Show all sequences]

AI049495.1 Clone IMAGE:1699282 kidney 3' read A
AI081830.1 Clone IMAGE:1662393 mixed 3' read A
AI127293.1 Clone IMAGE:1705849 heart 3' read P
AI128054.1 Clone IMAGE:1712727 uterus 3' read A
AI142844.1 Clone IMAGE:1661075 mixed 3' read
CB051025.1 Clone IMAGE:3289486 prostate 5' read A
AI174485.1 Clone IMAGE:1701312 kidney 3' read A
BX092687.1 Clone IMAGp998H071998_;_IMAGE:809526 ovary P
AI186895.1 Clone IMAGE:1740281 lung 3' read
AI193765.1 Clone IMAGE:1745153 lung 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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