> Synaptosomal-associated protein, 47kDa (SNAP47)
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UGID:187486     UniGene Hs.325081     Homo sapiens (human)   SNAP47 Order cDNA clone, Links
Synaptosomal-associated protein, 47kDa (SNAP47)

Human protein-coding gene SNAP47. Represented by 253 ESTs from 130 cDNA libraries. Corresponds to reference sequence NM_053052.3. [UniGene 187486 - Hs.325081]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_444280.2 SNAP47 gene product H. sapiens 100.0 463
XP_003308840.1 PREDICTED: synaptosomal-associated protein 47 isoform 1 P. troglodytes 99.8 463
NP_653104.1 Snap47 gene product M. musculus 73.8 412
NP_001091220.1 synaptosomal-associated protein, 47kDa X. laevis 55.5 326
NP_001038902.1 snap47 gene product D. rerio 54.3 418
Other hits (2 of 18) [Show all]SpeciesId(%)Len(aa)
XP_001087289.2 PREDICTED: synaptosomal-associated protein 47-like isoform 5, partial M. mulatta 96.9 447
XP_003893069.1 PREDICTED: synaptosomal-associated protein 47 P. anubis 96.5 400

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; uncharacterized tissue; lung; ovary; mixed; eye; placenta; testis; kidney; embryonic tissue; uterus; pancreas; mammary gland; thymus; tonsil; thyroid; liver; skin; prostate; pituitary gland; blood; cervix; muscle; intestine; connective tissue; lymph node; heart; ascites; stomach; lymph; salivary gland; nerve; bone; spleen
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 1
Map position: 1q42.13
UniSTS entry: Chr 1 SHGC-76436 [Map Viewer]
UniSTS entry: Chr 1 SHGC-76435 [Map Viewer]
UniSTS entry: Chr 1 HSC0YB102
UniSTS entry: Chr 1 D1S1837E
UniSTS entry: Chr 1 SHGC-32828 [Map Viewer]
UniSTS entry: Chr 1 D1S3689
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (13)

BX648570.1 Homo sapiens mRNA; cDNA DKFZp686M10160 (from clone DKFZp686M10160) PA
AY358188.1 Homo sapiens clone DNA129593 ESFI5812 (UNQ5812) mRNA, complete cds A
BC001332.1 Homo sapiens synaptosomal-associated protein, 47kDa, mRNA (cDNA clone IMAGE:3459631), partial cds PA
BC004418.1 Homo sapiens synaptosomal-associated protein, 47kDa, mRNA (cDNA clone IMAGE:3659680), partial cds PA
BC007786.2 Homo sapiens synaptosomal-associated protein, 47kDa, mRNA (cDNA clone IMAGE:3139971), partial cds PA
BC011145.1 Homo sapiens synaptosomal-associated protein, 47kDa, mRNA (cDNA clone IMAGE:3451454), partial cds PA
BC014059.2 Homo sapiens synaptosomal-associated protein, 47kDa, mRNA (cDNA clone IMAGE:3936239), partial cds PA
AK054633.1 Homo sapiens cDNA FLJ30071 fis, clone ASTRO2000095 P
BC018760.1 Homo sapiens synaptosomal-associated protein, 47kDa, mRNA (cDNA clone MGC:31978 IMAGE:4300396), complete cds PA
BC025231.1 Homo sapiens synaptosomal-associated protein, 47kDa, mRNA (cDNA clone IMAGE:4139762), partial cds PA
AY090635.2 Homo sapiens SVAP1 protein mRNA, complete cds PA
NM_053052.3 Homo sapiens synaptosomal-associated protein, 47kDa (SNAP47), mRNA PA
FJ236305.1 Homo sapiens epididymis luminal protein 170 (HEL170) mRNA, partial cds PA

EST sequences (10 of 253) [Show all sequences]

AA975680.1 Clone IMAGE:1588973 kidney 3' read A
AI002958.1 Clone IMAGE:1699517 kidney 3' read
AI088701.1 Clone IMAGE:1686513 brain 3' read A
AI086976.1 Clone IMAGE:1680146 skin 3' read A
BX093694.1 Clone IMAGp998K05790_;_IMAGE:345724 heart P
AI222580.1 Clone IMAGE:1761913 kidney 3' read A
AI223283.1 Clone IMAGE:1838921 testis 3' read A
AI204239.1 Clone IMAGE:1744787 lung 3' read A
CB146213.1 Clone L16HLK3-20-A11 liver 5' read P
AI371698.1 Clone IMAGE:2043191 brain 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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