> Calmin (calponin-like, transmembrane) (CLMN)
NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy
 Search
NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
MGC | ZGC | XGC
Finding cDNAs
UGID:181230     UniGene Hs.301478     Homo sapiens (human)   CLMN Order cDNA clone, Links
Calmin (calponin-like, transmembrane) (CLMN)

Human protein-coding gene CLMN. Represented by 238 ESTs from 141 cDNA libraries. Corresponds to reference sequence NM_024734.3. [UniGene 181230 - Hs.301478]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_079010.2 CLMN gene product H. sapiens 100.0 1001
XP_001146345.3 PREDICTED: calmin P. troglodytes 99.7 933
NP_001035772.1 Clmn gene product M. musculus 81.3 1020
XP_002665206.1 PREDICTED: hypothetical protein LOC100330495 D. rerio 66.1 496
NP_001188692.1 Muscle-specific protein 300, isoform B D. melanogaster 45.5 266
Other hits (2 of 22) [Show all]SpeciesId(%)Len(aa)
XP_003902283.1 PREDICTED: calmin P. anubis 97.5 1001
XP_001098474.2 PREDICTED: calmin-like, partial M. mulatta 97.0 977

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; testis; eye; uncharacterized tissue; placenta; mouth; mammary gland; mixed; prostate; intestine; esophagus; lymph node; skin; connective tissue; kidney; ovary; nerve; embryonic tissue; muscle; pancreas; bladder; thymus; trachea; lung; stomach; liver; uterus; heart; adrenal gland; bone; ascites; ganglia; blood
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 14
Map position: 14q32.13
UniSTS entry: Chr 14 WI-11595 [Map Viewer]
UniSTS entry: Chr 14 RH46343
UniSTS entry: Chr 14 RH92858
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (16)

AB007969.1 Homo sapiens mRNA, chromosome 1 specific transcript KIAA0500
BC049365.1 Homo sapiens calmin (calponin-like, transmembrane), mRNA (cDNA clone IMAGE:5259547), with apparent retained intron PA
AK125038.1 Homo sapiens cDNA FLJ43048 fis, clone BRTHA3004502
BC068482.1 Homo sapiens calmin (calponin-like, transmembrane), mRNA (cDNA clone MGC:87136 IMAGE:4375469), complete cds PA
AK023828.1 Homo sapiens cDNA FLJ13766 fis, clone PLACE4000129, highly similar to Calmin P
NM_024734.3 Homo sapiens calmin (calponin-like, transmembrane) (CLMN), mRNA P
AB047979.1 Homo sapiens mRNA for calmin, complete cds P
AK314315.1 Homo sapiens cDNA, FLJ95073, Homo sapiens calmin (calponin-like, transmembrane) (CLMN), mRNA P
AK022279.1 Homo sapiens cDNA FLJ12217 fis, clone MAMMA1001041, weakly similar to SPECTRIN BETA CHAIN, BRAIN P
BC032699.1 Homo sapiens calmin (calponin-like, transmembrane), mRNA (cDNA clone IMAGE:5396766), partial cds PA
BC025251.1 Homo sapiens calmin (calponin-like, transmembrane), mRNA (cDNA clone IMAGE:4868877), partial cds PA
BC014554.2 Homo sapiens calmin (calponin-like, transmembrane), mRNA (cDNA clone IMAGE:3837453), complete cds PA
AK025226.1 Homo sapiens cDNA: FLJ21573 fis, clone COL06666 PA
AL117526.1 Homo sapiens mRNA; cDNA DKFZp434P1550 (from clone DKFZp434P1550); partial cds PA
AB033014.1 Homo sapiens mRNA for KIAA1188 protein, partial cds P
BC040108.1 Homo sapiens calmin (calponin-like, transmembrane), mRNA (cDNA clone IMAGE:3880307), with apparent retained intron PA

EST sequences (10 of 238) [Show all sequences]

R08846.1 Clone IMAGE:127473 mixed 3' read
AI022170.1 Clone IMAGE:1652031 mixed 3' read
AA923247.1 Clone IMAGE:1544306 mixed 3' read PA
R22517.1 Clone IMAGE:130576 placenta 5' read
R22518.1 Clone IMAGE:130576 placenta 3' read A
AI138241.1 Clone IMAGE:1735438 testis 3' read P
AI140516.1 Clone IMAGE:1652753 mixed 3' read
BX097022.1 Clone IMAGp998A08113_;_IMAGE:121231 mixed PA
BX107834.1 Clone IMAGp998I18662_;_IMAGE:296537 mixed
CB118623.1 Clone L8SCK0-19-A02 liver 5' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help