> TAR DNA binding protein (TARDBP)
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UGID:181070     UniGene Hs.300624     Homo sapiens (human)   TARDBP Order cDNA clone, Links
TAR DNA binding protein (TARDBP)

Human protein-coding gene TARDBP. Represented by 1487 ESTs from 431 cDNA libraries. Corresponds to reference sequence NM_007375.3. [UniGene 181070 - Hs.300624]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_001102660.1 PREDICTED: TAR DNA-binding protein 43 M. mulatta 100.0 413
XP_003891150.1 PREDICTED: TAR DNA-binding protein 43 P. anubis 100.0 413
XP_514380.2 PREDICTED: TAR DNA-binding protein 43 isoform 3 P. troglodytes 100.0 413
NP_031401.1 TARDBP gene product H. sapiens 100.0 413
XP_535409.3 PREDICTED: TAR DNA-binding protein 43 C. lupus familiaris 99.5 413
NP_001039950.2 TARDBP gene product B. taurus 99.5 413
NP_663531.1 Tardbp gene product M. musculus 98.5 413
NP_001080637.1 TAR DNA binding protein X. laevis 93.9 244
NP_958884.1 tardbp gene product D. rerio 80.8 411
NP_477399.1 TAR DNA-binding protein-43 homolog, isoform A D. melanogaster 61.6 305
Other hits (2 of 30) [Show all]SpeciesId(%)Len(aa)
XP_001515396.2 PREDICTED: TAR DNA-binding protein 43 isoform 2 O. anatinus 99.3 413
XP_001492915.3 PREDICTED: TAR DNA-binding protein 43 E. caballus 99.3 413

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; testis; uterus; uncharacterized tissue; embryonic tissue; lung; kidney; thymus; placenta; mixed; blood; eye; intestine; pancreas; liver; skin; mammary gland; mouth; prostate; spleen; vascular; heart; stomach; trachea; connective tissue; ascites; lymph node; cervix; bladder; bone; ear; lymph; ovary; adrenal gland; esophagus; thyroid; bone marrow; pharynx; muscle; nerve; umbilical cord; tonsil; epididymis; adipose tissue; parathyroid; larynx
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 1
Map position: 1p36.22
UniSTS entry: Chr 1 WI-8757
UniSTS entry: Chr 2 RH27226
UniSTS entry: Chr 2 RH10991
UniSTS entry: Chr 2 HSC11D022
UniSTS entry: Chr 1 SHGC-74204 [Map Viewer]
UniSTS entry: Chr 2 D1S1845E
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (16)

AL050265.1 Homo sapiens mRNA; cDNA DKFZp564O1716 (from clone DKFZp564O1716) PA
BC059955.1 Homo sapiens TAR DNA binding protein, mRNA (cDNA clone IMAGE:4372646), partial cds A
NM_007375.3 Homo sapiens TAR DNA binding protein (TARDBP), mRNA PA
BC071657.1 Homo sapiens TAR DNA binding protein, mRNA (cDNA clone MGC:87845 IMAGE:5498250), complete cds PA
CR533534.1 Homo sapiens full open reading frame cDNA clone RZPDo834F0419D for gene TARDBP, TAR DNA binding protein; complete cds, incl. stopcodon P
AK222754.1 Homo sapiens mRNA for TAR DNA binding protein variant, clone: HEP00195 P
BC095435.1 Homo sapiens TAR DNA binding protein, mRNA (cDNA clone MGC:111119 IMAGE:30389805), complete cds PA
AF311304.1 Homo sapiens unknown mRNA A
EF434183.1 Homo sapiens TDP43 splice variant 2 mRNA, complete cds, alternatively spliced P
EF434182.1 Homo sapiens TDP43 splice variant 1 mRNA, complete cds, alternatively spliced P
EF434181.1 Homo sapiens TDP43 mRNA, complete cds, alternatively spliced P
BC001487.2 Homo sapiens TAR DNA binding protein, mRNA (cDNA clone IMAGE:3506121) PA
AK312416.1 Homo sapiens cDNA, FLJ92755, highly similar to Homo sapiens TAR DNA binding protein (TARDBP), mRNA P
AK299454.1 Homo sapiens cDNA FLJ57180 complete cds, highly similar to TAR DNA-binding protein 43 P
AK295920.1 Homo sapiens cDNA FLJ58188 complete cds, highly similar to TAR DNA-binding protein 43 P
U23731.1 Human TAR DNA-binding protein-43 mRNA, complete cds P

EST sequences (10 of 1487) [Show all sequences]

AA862797.1 Clone IMAGE:1469206 uncharacterized tissue 3' read A
AA864236.1 Clone IMAGE:1470400 uncharacterized tissue 3' read A
AA983663.1 Clone IMAGE:1559563 intestine 3' read A
AA906006.1 Clone IMAGE:1504989 mixed 3' read A
AA923669.1 Clone IMAGE:1457229 intestine 3' read A
AI077888.1 Clone IMAGE:1665547 skin 3' read
AI091272.1 Clone IMAGE:1651371 mixed 3' read
AI128592.1 Clone IMAGE:1691266 heart 3' read
AI141606.1 Clone IMAGE:1673208 mixed 3' read A
AI143794.1 Clone IMAGE:1708311 heart 3' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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