> SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 (SMARCA2)
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UGID:180871     UniGene Hs.298990     Homo sapiens (human)   SMARCA2 Links
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 (SMARCA2)

Human protein-coding gene SMARCA2. Represented by 486 ESTs from 221 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 180871 - Hs.298990]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_003061.3 SMARCA2 gene product H. sapiens 100.0 1589
XP_002800208.1 PREDICTED: probable global transcription activator SNF2L2-like M. mulatta 100.0 1172
XP_850159.1 PREDICTED: probable global transcription activator SNF2L2 isoform 2 C. lupus familiaris 99.6 1573
XP_003951484.1 PREDICTED: LOW QUALITY PROTEIN: probable global transcription activator SNF2L2 P. troglodytes 99.5 1499
NP_035546.2 Smarca2 gene product M. musculus 99.0 1582
NP_001038240.1 smarca2 gene product D. rerio 90.9 1567
NP_001165424.1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 X. laevis 85.8 1599
NP_536746.1 brahma, isoform A D. melanogaster 69.0 1588
NP_502082.1 Protein SWSN-4 C. elegans 65.8 1261
NP_012140.1 Sth1p S. cerevisiae 64.0 724
XP_957128.1 SNF2-family ATP dependent chromatin remodeling factor snf21 N. crassa 63.3 825
NP_197432.2 Homeotic gene regulator A. thaliana 57.5 724
XP_001691025.1 SNF2 superfamily protein C. reinhardtii 51.6 477
Other hits (2 of 61) [Show all]SpeciesId(%)Len(aa)
NP_001092585.1 SMARCA2 gene product B. taurus 99.4 1553
XP_002708230.1 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a2-like isoform 1 O. cuniculus 99.2 1594

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; mixed; testis; uterus; cervix; ovary; skin; intestine; eye; mammary gland; lung; vascular; pancreas; placenta; uncharacterized tissue; heart; prostate; embryonic tissue; parathyroid; bone; kidney; pituitary gland; spleen; trachea; ascites; ganglia; lymph node; thyroid; stomach; liver; muscle; connective tissue; blood; thymus; pharynx; mouth; bladder; lymph; adrenal gland; spinal cord
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 9
Map position: 9p22.3
UniSTS entry: Chr 9 SHGC-12004 [Map Viewer]
UniSTS entry: Chr 9 WI-19184 [Map Viewer]
UniSTS entry: Smarca2
UniSTS entry: Chr 9 PMC303366P11
UniSTS entry: Chr 9 SMARCA2_2377.2
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (13)

AY293824.1 Homo sapiens SMARCA2 mRNA, partial sequence P
AY295762.1 Homo sapiens SMARCA2 mRNA, partial sequence
NM_003070.3 Homo sapiens SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 (SMARCA2), transcript variant 1, mRNA P
BC068252.1 Homo sapiens cDNA clone IMAGE:4822434, containing frame-shift errors PA
AK308941.1 Homo sapiens cDNA, FLJ98982 P
NM_139045.2 Homo sapiens SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 (SMARCA2), transcript variant 2, mRNA P
AK094076.1 Homo sapiens cDNA FLJ36757 fis, clone UTERU2018522, highly similar to Human mRNA for transcriptional activator hSNF2a P
AK300093.1 Homo sapiens cDNA FLJ59976 complete cds, highly similar to Probable global transcription activator SNF2L2 (EC 3.6.1.-) P
AK299683.1 Homo sapiens cDNA FLJ53181 partial cds, highly similar to Probable global transcription activator SNF2L2 (EC 3.6.1.-) P
AK298045.1 Homo sapiens cDNA FLJ61143 complete cds, highly similar to Probable global transcription activator SNF2L2 (EC 3.6.1.-) P
AK296373.1 Homo sapiens cDNA FLJ61591 partial cds, highly similar to Probable global transcription activator SNF2L2 (EC 3.6.1.-) PA
X72889.1 H.sapiens hbrm mRNA PA
BC040029.1 Homo sapiens SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2, mRNA (cDNA clone IMAGE:5752305), partial cds P

EST sequences (10 of 486) [Show all sequences]

R14313.1 Clone IMAGE:28680 brain 5' read P
AA970877.1 Clone IMAGE:1576545 intestine 3' read A
AA995543.1 Clone IMAGE:1606666 kidney 3' read P
AA905794.1 Clone IMAGE:1505078 mixed 3' read P
AA922187.1 Clone IMAGE:1544054 mixed 3' read A
AI057088.1 Clone IMAGE:1676196 embryonic tissue 3' read P
AI074028.1 Clone IMAGE:1670839 uncharacterized tissue 3' read P
AI081778.1 Clone IMAGE:1661999 mixed 3' read P
AI097564.1 Clone IMAGE:1685826 brain 3' read P
AI123475.1 Clone IMAGE:1640707 testis 3' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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