> AT rich interactive domain 1B (SWI1-like) (ARID1B)
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UGID:179178     UniGene Hs.291587     Homo sapiens (human)   ARID1B Links
AT rich interactive domain 1B (SWI1-like) (ARID1B)

Human protein-coding gene ARID1B. Represented by 290 ESTs from 156 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 179178 - Hs.291587]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_065783.3 ARID1B gene product H. sapiens 100.0 2248
XP_518822.4 PREDICTED: AT-rich interactive domain-containing protein 1B isoform 2 P. troglodytes 99.9 1748
NP_001078824.1 Arid1b gene product M. musculus 95.3 2243
XP_698079.3 PREDICTED: AT-rich interactive domain-containing protein 1B D. rerio 65.3 2120
NP_996228.1 osa, isoform C D. melanogaster 53.9 334
Other hits (2 of 30) [Show all]SpeciesId(%)Len(aa)
XP_003898049.1 PREDICTED: AT-rich interactive domain-containing protein 1B P. anubis 99.2 1814
XP_001493135.3 PREDICTED: AT-rich interactive domain-containing protein 1B E. caballus 97.5 1774

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: uncharacterized tissue; brain; mixed; blood; placenta; liver; thyroid; lung; intestine; embryonic tissue; eye; mouth; salivary gland; bone; connective tissue; larynx; ascites; heart; bone marrow; cervix; uterus; testis; prostate; kidney; stomach; lymph node; skin; muscle; mammary gland; pancreas; ear; adrenal gland; thymus; trachea
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 6
Map position: 6q25.1
UniSTS entry: Chr 6 STS-D20286 [Map Viewer]
UniSTS entry: Chr 6 STS-T31821 [Map Viewer]
UniSTS entry: Chr 6 D6S1163E
UniSTS entry: Chr 6 RH119516
UniSTS entry: Chr 6 G34995
UniSTS entry: Chr 6 ARID1B_8076
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (13)

NM_017519.2 Homo sapiens AT rich interactive domain 1B (SWI1-like) (ARID1B), transcript variant 1, mRNA PA
AB033061.1 Homo sapiens mRNA for KIAA1235 protein, partial cds P
AK000921.1 Homo sapiens cDNA FLJ10059 fis, clone HEMBA1001405 P
AK025945.1 Homo sapiens cDNA: FLJ22292 fis, clone HRC04412 PA
AF259792.1 Homo sapiens p250R mRNA, complete cds P
NM_020732.3 Homo sapiens AT rich interactive domain 1B (SWI1-like) (ARID1B), transcript variant 2, mRNA PA
AK074180.1 Homo sapiens mRNA for FLJ00253 protein P
AF468300.1 Homo sapiens BRG1-binding protein ELD/OSA1 mRNA, complete cds PA
AK302356.1 Homo sapiens cDNA FLJ57012 complete cds, highly similar to AT-rich interactive domain-containing protein 1B P
BC009543.1 Homo sapiens AT rich interactive domain 1B (SWI1-like), mRNA (cDNA clone IMAGE:3896731), partial cds A
AF521671.1 Homo sapiens SWI/SNF chromatin remodeling complex subunit OSA2 (OSA2) mRNA, partial cds PA
Y08266.1 H.sapiens mRNA for DAN15 protein, partial P
AF253515.1 Homo sapiens BAF250b subunit mRNA, complete cds P

EST sequences (10 of 290) [Show all sequences]

AA961501.1 Clone IMAGE:1579707 mixed 3' read A
AI001856.1 Clone IMAGE:1613377 uncharacterized tissue 3' read A
AI052410.1 Clone IMAGE:1671698 uncharacterized tissue 3' read P
AI140648.1 Clone IMAGE:1739703 lung 3' read P
AI147601.1 Clone IMAGE:1696953 uterus 3' read A
BX110586.1 Clone IMAGp998L02114_;_IMAGE:121873 mixed
BX104788.1 Clone IMAGp998H104309_;_IMAGE:1696953 uterus
BX110573.1 Clone IMAGp998H20690_;_IMAGE:307267 lung
AI183710.1 Clone IMAGE:1739053 lung 3' read P
AI221750.1 Clone IMAGE:1842753 mixed 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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