> RNA binding motif protein 39 (RBM39)
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UGID:176382     UniGene Hs.282901     Homo sapiens (human)   RBM39 Order cDNA clone, Links
RNA binding motif protein 39 (RBM39)

Human protein-coding gene RBM39. Represented by 1058 ESTs from 428 cDNA libraries. Corresponds to 7 reference sequences (different isoforms). [UniGene 176382 - Hs.282901]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_573505.2 RNA-binding protein 39 M. musculus 100.0 529
XP_003749653.1 PREDICTED: RNA-binding protein 39-like isoform 1 R. norvegicus 100.0 529
NP_001162566.1 RNA-binding protein 39 P. anubis 100.0 529
XP_003316931.1 PREDICTED: uncharacterized protein LOC458443 isoform 1 P. troglodytes 100.0 529
NP_909122.1 RBM39 gene product H. sapiens 100.0 529
XP_864959.2 PREDICTED: RNA-binding protein 39 isoform 3 C. lupus familiaris 100.0 529
XP_001501869.1 PREDICTED: RNA-binding protein 39 isoform 1 E. caballus 100.0 529
XP_003360012.1 PREDICTED: RNA-binding protein 39 S. scrofa 100.0 529
NP_001193433.1 RNA-binding protein 39 B. taurus 100.0 529
XP_004014580.1 PREDICTED: RNA-binding protein 39 isoform 1 O. aries 100.0 529
NP_001164806.1 RNA-binding protein 39 O. cuniculus 100.0 529
XP_002798213.1 PREDICTED: RNA-binding protein 39-like M. mulatta 100.0 426
XP_001371651.1 PREDICTED: RNA-binding protein 39 isoform 1 M. domestica 99.6 523
NP_001086950.1 RNA binding motif protein 39 X. laevis 94.6 539
NP_001012304.1 rbm39a gene product D. rerio 90.8 522
NP_609095.1 CG11266, isoform B D. melanogaster 65.1 590
NP_568220.1 RNA-binding protein 39 A. thaliana 52.7 330
NP_500025.1 Protein Y55F3AM.3, isoform a C. elegans 52.5 518
XP_955878.1 hypothetical protein NCU03491 N. crassa 51.4 249
Other hits (2 of 38) [Show all]SpeciesId(%)Len(aa)
XP_002192236.1 PREDICTED: RNA-binding protein 39 T. guttata 99.4 521
XP_003642487.1 PREDICTED: RNA-binding protein 39-like G. gallus 99.4 521

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; testis; uterus; embryonic tissue; mixed; liver; uncharacterized tissue; placenta; lung; bone marrow; intestine; amniotic fluid; mammary gland; epididymis; bladder; connective tissue; thymus; kidney; eye; pancreas; mouth; spleen; skin; vascular; muscle; prostate; lymph; stomach; thyroid; blood; heart; bone; lymph node; pituitary gland; trachea; ascites; ovary; cervix; salivary gland; adipose tissue; larynx; esophagus; adrenal gland; ear; parathyroid; pharynx; nerve; ganglia; tonsil
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 20
Map position: 20q11.22
UniSTS entry: Chr X G64285
UniSTS entry: Chr X REN58783
UniSTS entry: Chr X RH69003
UniSTS entry: Chr X REN58785
UniSTS entry: Chr 20 REN58784
UniSTS entry: Chr X REN58786
UniSTS entry: Chr 20 REN58938
UniSTS entry: Chr 20 STS-R02552
UniSTS entry: Chr 20 A007I35 [Map Viewer]
UniSTS entry: Chr 20 REN58936
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (19)

AK126158.1 Homo sapiens cDNA FLJ44170 fis, clone THYMU2035319, highly similar to RNA-binding region-containing protein 2 P
NM_184234.2 Homo sapiens RNA binding motif protein 39 (RBM39), transcript variant 1, mRNA PA
NM_004902.3 Homo sapiens RNA binding motif protein 39 (RBM39), transcript variant 2, mRNA PA
L10910.1 Homo sapiens splicing factor (CC1.3) mRNA, complete cds P
L10911.1 Homo sapiens splicing factor (CC1.4) mRNA, complete cds P
DQ656052.2 Homo sapiens clone UGL062-A-H5, mRNA sequence P
BC131543.1 Homo sapiens RNA binding motif protein 39, mRNA (cDNA clone MGC:141906 IMAGE:40085367), complete cds P
BC141835.1 Homo sapiens RNA binding motif protein 39, mRNA (cDNA clone MGC:165071 IMAGE:40148871), complete cds PA
BC158172.1 Homo sapiens RNA binding motif protein 39, mRNA (cDNA clone MGC:164941 IMAGE:40148190), complete cds PA
AK299678.1 Homo sapiens cDNA FLJ59214 complete cds, highly similar to RNA-binding region-containing protein 2 P
AK299165.1 Homo sapiens cDNA FLJ58459 complete cds, highly similar to RNA-binding region-containing protein 2 PA
AK303910.1 Homo sapiens cDNA FLJ58465 complete cds, highly similar to RNA-binding region-containing protein 2 P
BC008204.1 Homo sapiens RNA-binding region (RNP1, RRM) containing 2, mRNA (cDNA clone IMAGE:3867490), with apparent retained intron PA
AK297520.1 Homo sapiens cDNA FLJ59035 complete cds, highly similar to RNA-binding region-containing protein 2 PA
NM_001242600.1 Homo sapiens RNA binding motif protein 39 (RBM39), transcript variant 4, mRNA PA
NM_001242599.1 Homo sapiens RNA binding motif protein 39 (RBM39), transcript variant 3, mRNA PA
NR_040723.1 Homo sapiens RNA binding motif protein 39 (RBM39), transcript variant 6, non-coding RNA PA
NR_040724.1 Homo sapiens RNA binding motif protein 39 (RBM39), transcript variant 7, non-coding RNA PA
NR_040722.1 Homo sapiens RNA binding motif protein 39 (RBM39), transcript variant 5, non-coding RNA PA

EST sequences (10 of 1058) [Show all sequences]

AA903908.1 Clone IMAGE:1417763 lung 3' read
AA975564.1 Clone IMAGE:1588878 kidney 3' read
AA999936.1 Clone IMAGE:1613681 uncharacterized tissue 3' read A
AI032652.1 Clone IMAGE:1655610 mixed 3' read
AI033311.1 Clone IMAGE:1655120 mixed 3' read
AI040577.1 Clone IMAGE:1656373 mixed 3' read
AI050005.1 Clone IMAGE:1699383 kidney 3' read A
AI052366.1 Clone IMAGE:1676136 embryonic tissue 3' read
AI055978.1 Clone IMAGE:1648502 parathyroid 3' read A
AI057421.1 Clone IMAGE:1652701 mixed 3' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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